The 1999–2000 FC Bayern Munich season was the 100th season in the club's history. FC Bayern Munich clinched its second consecutive league title, its third consecutive DFB-Ligapokal championship, and the 1999–2000 DFB-Pokal.
Source: Kicker Only competitive matches = Number of bookings; = Number of sending offs after a second yellow card; = Number of sending offs by a direct red card.