The 2013–14 FC Tom Tomsk season was the club's 1st season back in the Russian Premier League, the highest tier of football in Russia, following their relegation at the end of the 2011–12 season. They finished the season in 13th place, qualifying for the Relegation play-offs where they lost over two legs to FC Ufa and were relegated from the Premier League. Tom Tomsk also took part in the 2013–14 Russian Cup, where they reached the Quarter-finals, losing to Luch-Energiya Vladivostok.
Squad
First-team squad
Note: Flags indicate national team as defined under FIFA eligibility rules. Players may hold more than one non-FIFA nationality.
Source: Russian Premier League Rules for classification: 1) points; 2) number of wins; 3) head-to-head points; 4) number of head-to-head wins; 5) head-to-head goal difference; 6) number of head-to-head goals scored; 7) number of head-to-head away goals scored; 8) goal difference; 9) number of goals scored; 10) number of away goals scored; 11) position in the 2012–13 season (only used until all the regularly scheduled games have been played); 11) extra play-off game or tournament between the teams in question. (R) Relegated