CollecTF

CollecTF
Content
Descriptiondatabase of experimentally validated TF-binding sites
Organismsbacteria
Contact
AuthorsKılıç, et al. (2014) [1]
Primary citationPMID 24234444
Release date2013
Access
Data formatFASTA, CSV, ARFF
Websitecollectf.org
compbio.umbc.edu
Download URL[1]

CollecTF is a database of transcription factor binding sites in the Bacteria domain.[1]

CollecTF compiles only experimentally validated TF-binding sites. This is accomplished through the manual curation of peer-reviewed literature with a special focus on the experimental process used to identify TF-binding sites.

CollecTF entries are periodically submitted to NCBI for integration into RefSeq complete genome records as link-out features, maximizing the visibility of the data and enriching the annotation of RefSeq files with regulatory information. Seeking to facilitate comparative genomics and machine-learning analyses of regulatory interactions, in its initial release CollecTF provides domain-wide coverage of two TF families (LexA and Fur), as well as extensive representation for a clinically important bacterial family, the Vibrionaceae.

References

  1. ^ a b Kilic, S.; White, E. R.; Sagitova, D. M.; Cornish, J. P.; Erill, I. (14 November 2013). "CollecTF: a database of experimentally validated transcription factor-binding sites in Bacteria". Nucleic Acids Research. 42 (D1): D156–D160. doi:10.1093/nar/gkt1123. PMC 3965012. PMID 24234444.

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