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A contig (from contiguous) is a set of overlapping DNA segments that together represent a consensus region of DNA. In bottom-up sequencing projects, a...

Contig is a command line defragmentation utility for Windows developed by Microsoft as part of the Sysinternals Suite. Contig is designed to defragment...

a set of contig or scaffold lengths. The N50 is similar to a mean or median of lengths, but has greater weight given to the longer contigs. It is used...

technologies often produced assemblies at the contig (short contiguous sequences) or scaffold (ordered sets of contigs) level, with limited chromosomal context...

By this approach, physical map contigs can be "anchored" onto a genetic map. The clones used in the physical map contigs can then be sequenced on a local...

constitute the entire genome being synthesized. Note that cassettes differ from contigs by definition, in that these sequences contain regions of homology to other...

constitute the entire genome being synthesized. Note that cassettes differ from contigs by definition, in that these sequences contain regions of homology to other...

sequences known as contigs. Contigs can be linked together into scaffolds by following connections between mate pairs. The distance between contigs can be inferred...

tags into EST contigs. Example of resources that provide EST contigs include: TIGR gene indices, Unigene, and STACK Constructing EST contigs is not trivial...

Lutjanidae): Construction of a high-density linkage map, anchoring of genome contigs and comparative genomic analysis". PLOS ONE. 15 (4) e0232402. Bibcode:2020PLoSO...

organism 106 Mb 22,285 2011 scaffold N50 = 1.7 Mb Selaginella lepidophylla Lycopodiophyta Desiccation tolerance 122 Mb 27,204 2018 contig N50 = 163 kb...

Overlapping reads form contigs; contigs and gaps of known length form scaffolds....

The ACE file format is a specification for storing data about genomic contigs. The original ACE format was developed for use with Consed, a program for...

non-random segregation of sister chromatids, the identification of misoriented contigs in genome assemblies, de novo genome assembly of both haplotypes in diploid...

including a single sequence editor, a multiple sequence alignment editor and a contig editor. MacVector tries to use a minimum of windows and steps to access...

the mangrove virome. Reference sequences are coloured black, and virome contigs are indicated with varied colours. The scale bar represents half amino...

assembled into contigs, which, by the nature of their assembly, have gaps between them. The next step is to then bridge the gaps between these contigs to create...

metagenomic contigs that contain DUF1874 motif examples. This absence could occur because the sequences are truncated in metagenomic contigs, because some...

sequence Conserved sequence Constant region Constitutive gene Contig Contig map Contig maps Contiguous genes Continuous variation Controlling element...

are thermophiles. In the study that established the class, metagenomic contigs assigned to Odinarchaeota were recovered exclusively from hot spring environments...

satisfying the constraint. Applications of PQ trees include creating a contig map from DNA fragments, testing a matrix for the consecutive ones property...

1 ##reference=file:///seq/references/1000GenomesPilot-NCBI36.fasta ##contig=<ID=20,length=62435964,assembly=B36,md5=f126cdf8a6e0c7f379d618ff66beb2da...

Firstly, contigs were generated de novo, secondly, the contigs were ordered and concatenated into supercontigs, and, thirdly, the gaps between contigs were...

of the gene encoding for the ob protein. Clones were used to construct a contig across most of the 650-kb critical region of ob. Exons from this interval...

effective coverage and adopted a string graph-based assembler, Fermi, for contig construction. This approach proved superior to de Bruijn graph-based assembly...

create ambiguities in the formation of contigs in genome assembly, while ambiguities in transcriptome assembly contigs usually correspond to spliced isoforms...

produced short reads that are pieced together using computer programs to form contigs and joined into assemblies. This technique works poorly for highly repetitive...

contaminants → de novo assembly of the remaining reads → annotation of viral contigs → molecular detection of specific viruses → phylogenetic analysis → interpretation...

The presence of contig n6409 sequence was confirmed via Sanger sequencing. This allowed for phylogenetic analysis to position the contig with other dicistroviruses...

metagenomics, binning is the computational process of grouping assembled contigs and assigning them to their separate genomes of origin. Binning methods...

of startup applications, RootkitRevealer, a rootkit detection utility, Contig, PageDefrag and a total of 65 other utilities. NTFSDOS, which allowed NTFS...

was sequenced by researchers using Illumina technology, resulting in 25 contigs and a total length of about 4.3 megabases. The annotation of the genome...

varieties with high yield rates. Predicted genes in homologous primary contigs have been identified as accounting for various traits expressed via variation...

strain AM401T, contained 1,077 currently identified contigs (sets of overlapping DNA fragments) with an L50 and N50 of 102 and 35,723...

into overlapping subsequences of a fixed length k (k-mers) known as contigs. Contigs are aligned to reference databases for sequence similarity to assign...

using direct repeat sequences in partially assembled CRISPR arrays from contigs (overlapping DNA segments that together represent a consensus region of...

select the highest quality and most probable contiguous sequence (contig). Contigs will then be joined together to create a scaffold. The final consensus...

Lench NJ, Telford EA, Andersen SE, et al. (1997). "An EST and STS-based YAC contig map of human chromosome 9q22.3". Genomics. 38 (2): 199–205. doi:10.1006/geno...

parameters separately for each disk. Russinovich, Mark (July 4, 2016). "Contig v1.8". Windows Sysinternals. Microsoft. Retrieved June 9, 2011. "Defraggler...

Stage 3: paired assembly graph construction. Stage 4: contig construction. SPAdes outputs contigs and allows to map reads back to their positions in the...

aligned to a reference genome or assembled de novo to generate long-range contigs. The read alignment step is important for determining the order and orientation...

region on human chromosome 19: assembly and analysis of a 700-kb cosmid contig spanning the region". Genomics. 23 (3): 659–68. doi:10.1006/geno.1994.1555...

Streptomyces leeuwenhoekii genome: de novo sequencing and assembly in single contigs of the chromosome, circular plasmid pSLE1 and linear plasmid pSLE2". BMC...

extracts the contigs. After running velvetg a number of files are generated. Most importantly, a file of contigs contains the sequences of the contigs longer...

HuRef genome using HUGO gene names, Ensembl, and dbSNP identifiers, HuRef contig or scaffold locations, or NCBI chromosome locations. Users can then browse...

locus for autosomal dominant retinitis pigmentosa, construction of a YAC contig and investigation of the candidate gene retinal fascin". Eur J Hum Genet...

with plasmids) or in a draft format (containing multiple unassembled contigs). A new species of Exiguobacterium chiriqhucha has been found to have global...

centromere chromosome chromosomal translocation cloning congenital disorder contig craniosynostosis cystic fibrosis cytogenetic map deletion diabetes mellitus...

short reads, they were able to generate 6.58 million contigs greater than 500 bp for a total contig length of 10.3 Gb and a N50 length of 2.2 kb. The study...

earlier genome sequences were produced, they do not meet modern standards (contig N50 > 1 MB). One of the first genomes was presented in 2025, that of Orchesella...

See CG, Boxer M, Burchell B (September 1994). "Isolation of a human YAC contig encompassing a cluster of UGT2 genes and its regional localization to chromosome...

Minna JD, Lerman MI (1996). "Construction of a 600-kilobase cosmid clone contig and generation of a transcriptional map surrounding the lung cancer tumor...

previously by predominantly bioinformatic or experimental methods. The contigs in which Ocean-VII RNAs are quite small. Consequently, it is ambiguous...

PMID 9695946. S2CID 16499945. Horvat S, Medrano JF (1998). "A 500-kb YAC and BAC contig encompassing the high-growth deletion in mouse chromosome 10 and identification...

recover the sequences of the reads. The reads can then be assembled into contigs. To determine the phylogenetic identity of a sequence, it is compared to...

S2CID 22259236. Christian SL, Bhatt NK, Martin SA, et al. (1998). "Integrated YAC contig map of the Prader-Willi/Angelman region on chromosome 15q11-q13 with average...

massiliensis, which is about 3.4 Mb, was found to contain 5 scaffolds and 27 contigs greater than 1500 base pairs. G+C nucleotide content comprises 67% of the...

Andersson, Anders F.; Quince, Christopher (2014). "Binning metagenomic contigs by coverage and composition". Nature Methods. 11 (11): 1144–1146. doi:10...

of the interleukin-1 gene cluster: construction of an integrated YAC/PAC contig and a partial transcriptional map in the region of chromosome 2q13". Genomics...

of the interleukin-1 gene cluster: construction of an integrated YAC/PAC contig and a partial transcriptional map in the region of chromosome 2q13". Genomics...

strains. Vc_AZ_1 assembled into 11 contigs totaling 2.78 Mbp via metagenome, with 54.8% GC. Vc_AZ_2 assembled into 38 contigs totaling 2.98 Mbp via Hi-C, with...

De Vriendt E, Van Broeckhoven C, Timmerman V, Beuten J (2000). "A clone contig of 12q24.3 encompassing the distal hereditary motor neuropathy type II gene"...

L, Silins G, Grimmond S, et al. (1999). "A 500-kb sequence-ready cosmid contig and transcript map of the MEN1 region on 11q13". Genomics. 55 (1): 49–56...

to produce long stretches of sequences called contigs. Taxonomic identification of the resulting contigs is performed by matching them to the genomes and...

comparative metagenomics. CrAss assumes that a contig(s) made up of reads from differing metagenomes (cross-contig) is representative of a biological entity...

chromosome 15 in contig NW_001493315.1 nucleotides #1085432–1086142 and the originating sequence may be found on bovine chromosome 2 in contig NW_001501789...

genome mapping in complex cereal genomes in the framework of FP7 consortium (contig assembly algorithms for BAC libraries based on fingerprinting or DNA-DNA...

of the interleukin-1 gene cluster: construction of an integrated YAC/PAC contig and a partial transcriptional map in the region of chromosome 2q13". Genomics...

to assess the quality of a de novo assembly include median contig length, number of contigs and N50. Genome guided: This approach relies on the same methods...

molecules, unusually reference assembly NG Incomplete genomic region NT Contig or scaffold, clone-based or WGS NZ Complete genomes and unfinished WGS data...

reads in each cluster after reordering them or assembling them into longer contigs, achieving perhaps the best trade-off between the running time and compression...

extraction          (D) cloning and library construction          (E) sequencing the clones          (F) sequence assembly into contigs and scaffolds...

sequenced clone. Any new overlapping clones can then be sequenced forming a contig. This technique, called chromosome walking, can be exploited to sequence...

Soularue, P., Belova, M., Sambucy, J-L., Susini, L., ... and Cohen, D. "A YAC contig map of the human genome. Nature 1995 Sep; 377(6547 Suppl):175-297. Cited...

of genome assembly, where sequences are aligned to find overlap so that contigs (long stretches of sequence) can be formed. Another use is SNP analysis...

high-resolution integrated map spanning the SDHD gene at 11q23: a 1.1-Mb BAC contig, a partial transcript map and 15 new repeat polymorphisms in a tumour-suppressor...

more frequently used results from this model is the expected number of contigs, given the number of fragments sequenced. If one neglects the amount of...

McCluskey TS, Monaco JJ (February 2000). "Identification of 40 genes on a 1-Mb contig around the IL-4 cytokine family gene cluster on mouse chromosome 11". Genomics...

(1997). "Physical mapping of the HOXA1 gene and the hnRPA2B1 gene in a YAC contig from human chromosome 7p14-p15". Human Genetics. 99 (6): 831–833. doi:10...

High-Resolution P1 Artificial Chromosome/Bacterial Artificial Chromosome Contig of the Critical Region". The American Journal of Human Genetics. 62 (4):...

bacterial genomes. To serve as scaffolds for assembly, assembled sequence contigs can be scanned for restriction sites in silico using known sequence data...

(1995) also propose: I-Contig, violated when a word- or morpheme-internal segment is deleted (from "input-contiguity") O-Contig, violated when a segment...

Saunders/Elsevier. ISBN 978-1-4160-2973-1. "Homo sapiens chromosome 6 genomic contig, GRCh37.p13 Primary Assembly". 13 August 2013. [1]"Entrez Gene: SLC17A5...

related phylogeny. “Levels of DNA sequence similarity of the groEL DNA contig (465 bp) of strain EX-07T were 81.3–82.8 % when compared with the type strains...

sequence assembly and contig editing, aligning cDNA against genomic templates, sequence alignment and editing, alignment of contigs to each other with ClustalW...

sequenced by the 454 Life Sciences technology, was assembled into 27 contigs of a total length of 2.5 Mb with GC content of 43.5% and 29x genome coverage...

Wheat (Triticum aestivum L.) Chloroplast Genome: Complete Sequence and Contig Clones". Plant Molecular Biology Reporter. 18 (3): 243–253. doi:10.1007/BF02823995...

within metagenomic sequences, and these sequences often consist of short contigs that do not permit detailed analysis of nearby protein-coding genes. However...

in 2026. The genome size is approximately 318.6 Mb, with 99.64% of the contig sequences anchored to 14 pseudo-chromosomes. The assembly has a BUSCO completeness...

Ward DC, Le Paslier D, Altherr MR, Dorman TE, Moir DT (Jan 1995). "A YAC contig spanning a cluster of human type III receptor protein tyrosine kinase genes...

properly closed after its last use, and the contents may be inconsistent. CONTIG indicates that the file is stored contiguously on disk; that is, each virtual...

it was screened for sequences closely related to adenylation domains. Contigs that were found to code for teixobactin biosynthetic pathways were manually...

JD, Lerman MI (April 1996). "Construction of a 600-kilobase cosmid clone contig and generation of a transcriptional map surrounding the lung cancer tumor...

"Systematic sequencing of the human HLA-A/HLA-F region: establishment of a cosmid contig and identification of a new gene cluster within 37 kb of sequence". Genomics...

S2CID 25320509. Veugelers M, De Cat B, Delande N, et al. (2002). "A 4-Mb BAC/PAC contig and complete genomic structure of the GPC5/GPC6 gene cluster on chromosome...

sequence analysis, tissue expression, and assignment to the CC chemokine gene contig on chromosome 17q11.2". Genomics. 40 (2): 323–31. doi:10.1006/geno.1996...

have clone contigs (an assembled set of overlapping DNA sequences) that cannot be confidently placed on a specific chromosome. Similar contigs are concatenated...

6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase (PFKFB1) within a YAC contig in Xp11.21". Genomics. 40 (2): 358–61. doi:10.1006/geno.1996.4530. PMID 9119406...

"PyDamage: automated ancient damage identification and estimation for contigs in ancient DNA de novo assembly". PeerJ. 9 e11845. doi:10.7717/peerj.11845...

producing better quality. The overlapping sequences are then aligned into contigs and merged. Usually, several samples are pooled in one run, and each sample...

"Cloning of a novel, anonymous gene from a megabase-range YAC and cosmid contig in the neurofibromatosis type 2/meningioma region on human chromosome 22q12"...

Hornigold N, Davies AM, Knowles MA (Nov 1999). "A sequence-ready 840-kb PAC contig spanning the candidate tumor suppressor locus DBC1 on human chromosome 9q32-q33"...

A, Siegel-Bartelt J, Northrup H, Elder FF (Sep 1995). "A 4-megabase YAC contig that spans the Langer–Giedion syndrome region on human chromosome 8q24.1:...

algorithms. First round of de novo assembly produces hundreds to thousands of contigs, which can be computationally profiled in terms of their melting temperature...

fragments with overlapping areas, called contigs, and lining them up. If a reference sequence is known, the contigs are then compared to it for variant identification...

Li, Heng (2013). "Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM". arXiv:1303.3997 [q-bio.GN]. Zhang, H.; Song, L.; Wang, X...

sequence assembly programs like Newbler. Consed was originally developed as a contig editing and finishing tool for large-scale cosmid shotgun sequencing in...

PMID 9160889. Smith CM, Ma NS, Nowak NJ, Shows TB, Gerhard DS (Aug 1997). "A 3-Mb contig from D11S987 to MLK3, a gene-rich region in 11q13". Genome Research. 7 (8):...

biology laboratory DNA and Protein Sequence viewing, editing and annotating Contig assembly and chromatogram editing including comparison to a reference sequence...

using a protein query". blast.ncbi.nlm.nih.gov. Retrieved 2019-02-25. "EBI Tools: Error". "SNP linked to Gene (geneID:375759) Via Contig Annotation"....

1–13. PMID 8884173. Cowley CM, Simrak D, Marsden MD, et al. (1997). "A YAC contig joining the desmocollin and desmoglein loci on human chromosome 18 and ordering...

Kessel A (May 2000). "Construction of a 350-kb sequence-ready 11q13 cosmid contig encompassing the markers D11S4933 and D11S546: mapping of 11 genes and 3...

JD, Lerman MI (April 1996). "Construction of a 600-kilobase cosmid clone contig and generation of a transcriptional map surrounding the lung cancer tumor...

identification of taxonomically informative genes colocalized on assembled contigs. ViromeQC can display contamination for the dataset overall and DRAM-v...

metagenomics The discovery process involves marine sampling, DNA sequencing and contig generation. Previously unknown genes, pathways and even whole genomes are...

then computer assembled into overlapping or contiguous sequences (termed "contigs") which resemble the full genomic sequence once fully assembled. Sanger...

the length of a genome therefore the reads must be assembled into longer contigs. The data may also contain errors, caused by limitations in the DNA sequencing...

PMID 8317501. Hou J, Parrish J, Lüdecke HJ, et al. (1996). "A 4-megabase YAC contig that spans the Langer-Giedion syndrome region on human chromosome 8q24.1:...

Smith CM, Ma NS, Nowak NJ, Shows TB, Gerhard DS (October 1997). "A 3-Mb Contig from D11S987 to MLK3, a Gene-Rich Region in 11q13". Genome Res. 7 (8): 835–42...

H (2013-05-26), Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM, arXiv:1303.3997 "Burrows-Wheeler Aligner". bio-bwa.sourceforge...

of the interleukin-1 gene cluster: construction of an integrated YAC/PAC contig and a partial transcriptional map in the region of chromosome 2q13". Genomics...

scores. Compare Contigs, Phred, Phrap, and Bowtie support. Build separate contigs for hundreds of different clones or a single contig with thousands of...

Computer software is used to align the sequenced fragments via overlapping contigs, allowing scientists to deduce the relative genomic locations of each fragment...

environmental DNA samples from a cold seep located in Norway. These metagenomic contigs are quite short, and it is consequently difficult to determine if the RNA...

Povey S, See CG, Boxer M, Burchell B (Feb 1995). "Isolation of a human YAC contig encompassing a cluster of UGT2 genes and its regional localization to chromosome...

Cox DR, Myers RM (March 1996). "Construction of a 750-kb bacterial clone contig and restriction map in the region of human chromosome 21 containing the...

closer to the mutant allele with each new clone. This process produces a contig map of the locus and is known as chromosome walking. With the completion...

PMID 10924517. Paris MJ, Williams BR (October 2000). "Characterization of a 500-kb contig spanning the region between c-Ha-Ras and MUC2 on chromosome 11p15.5". Genomics...

yellow poplar tree wood chips. Poplar-1 RNAs generally occur in sequencing contigs that are relatively small. Therefore, there is not enough information on...

O'briant KC, Kim YC, et al. (1999). "A 1.4-Mb high-resolution physical map and contig of chromosome segment 11p15.5 and genes in the LOH11A metastasis suppressor...

Kere J, Lehrach H, Schlessinger D, Willard HF (February 1995). "A 6-Mb YAC contig in Xp22.1-p22.2 spanning the DXS69E, XE59, GLRA2, PIGA, GRPR, CALB3, and...

partial-genome sequence data, including unannotated raw sequence assembly contigs". It is a resource intended to create a better understanding of the resistome...

NCBI. Retrieved 10 May 2014. "SNP linked to Gene ZNF280D(geneID:54816) Via Contig Annotation". NCBI. Retrieved 10 May 2014. "Genomatix". Genomatix. Archived...

DR; Myers, RM (March 1996). "Construction of a 750-kb bacterial clone contig and restriction map in the region of human chromosome 21 containing the...

EV, Opdenakker G, Gunge N, Sakaki Y, Iio M, Miura R (June 1996). "A YAC contig of the human CC chemokine genes clustered on chromosome 17q11.2". Genomics...

chemokines. Europ. J. Biochem. 248: 507-515, 1997. Naruse et al. A YAC contig of the human CC chemokine genes clustered on chromosome 17q11.2. Genomics...

Levilliers J, Levi-Acobas F, Weil D, Weissenbach J, Cohen D (Sep 1995). "A YAC contig and an EST map in the pericentromeric region of chromosome 13 surrounding...

Integration Type Access Method Source CodonCode Aligner Built-in Available under Contig → Align with Muscle Geneious Built-in Available under Align/Assemble → Multiple...

as these duplications are over-represented in unordered and unassigned contigs. Furthermore, these duplications are more prevalent within the pericentromeric...

Shimizu N, Soeda E, Sakaki Y, Ohki M (Feb 2000). "A 2-Mb sequence-ready contig map and a novel immunoglobulin superfamily gene IGSF4 in the LOH region...

resistance. The cabbage looper genome is 368.2 Mb long (scaffold N50=14.2 Mb; contig N50=621.9 kb; GC content=35.6%) and includes 14,037 protein-coding genes...

Thakker RV, et al. (Nov 1997). "Construction of a 1.2-Mb sequence-ready contig of chromosome 11q13 encompassing the multiple endocrine neoplasia type 1...

TyersLab.com. Retrieved 2021-12-17. "SNP linked to Gene (geneID:23329) Via Contig Annotation". www.ncbi.nlm.nih.gov. Retrieved 2021-12-09. Adzhubei IA, Schmidt...

Fair KL, Ritter JH, Marshall P, Donis-Keller H (1999). "Sequence-ready contig for the 1.4-cM ductal carcinoma in situ loss of heterozygosity region on...

GABAA receptor subunits alpha 1, alpha 6, beta 2, and gamma 2 to a YAC contig of 5q33". European Journal of Human Genetics. 4 (4): 199–204. doi:10.1159/000472199...

sequences and parental Illumina short-read sequences to generate highly phased contig assemblies. Three different tools were used to construct the pangenome graph:...

(January 1995). "Localization of the aquaporin 1 (AQP1) gene within a YAC contig containing the polymorphic markers D7S632 and D7S526". Genomics. 25 (2):...

cost. Though with LRS is improving fast in those areas too. Paired-end tag Contig "Sequencing library: what is it?". Breda Genetics. 2016-08-12. Retrieved...

Riethman HC, Collins FS, Brody LC (Jul 1996). "A 500-kb physical map and contig from the Harvey ras-1 gene to the 11p telomere". Genomics. 35 (2): 353–60...

7871. PMC 22154. PMID 10393914. "SNP linked to Gene (geneID:283537) Via Contig Annotation". NCBI (National Center for Biotechnology Information) dbSNP...

was sequenced by Sanger shotgun sequencing and mapped with extensive BAC contig-based physical mapping. There are significant, fundamental similarities...

allocate space for the direct data set in contiguous tracks by coding SPACE=(,,CONTIG) on the DD statement. Direct data sets must be preformatted before use by...

from human plasma. J. Exp. Med., 1996, 183: 295-299. Naruseet al., A YAC contig of the human CC chemokine genes clustered on chromosome 17q11.2. Genomics...

The assembly is 412.82 Mb with a scaffold N50 of 15.70 Mb, and 98.11% of contigs were anchored to 30 chromosomes; 16,120 protein-coding genes were annotated...

technologies. Longer patterns of methylation are often lost because smaller contigs still need to be assembled. Transcriptomics is the study of the transcriptome...

Ward DC, Le Paslier D, Altherr MR, Dorman TE, Moir DT (Jan 1995). "A YAC contig spanning a cluster of human type III receptor protein tyrosine kinase genes...

See CG, Boxer M, Burchell B (September 1994). "Isolation of a human YAC contig encompassing a cluster of UGT2 genes and its regional localization to chromosome...

complex variants, there is a very low chance that they will make a clean contig. Since this is the case most often, the path divergence algorithm is useful...

genes and looking for common patterns of collinearity on a chromosomal or contig scale. Homologies are usually determined on the basis of high bit score...

various algorithms into custom workflows with UGENE Workflow Designer Contigs assembly with CAP3 3D structure viewer for files in Protein Data Bank (PDB)...

high-resolution P1 artificial chromosome/bacterial artificial chromosome contig of the critical region". Am. J. Hum. Genet. 62 (4): 890–903. doi:10.1086/301794...

strategy and was revealed to contain a total of 3,019,868 base pairs in 164 contigs. The GC ratio was found to be 53.1% to 46.9%; 3,235 protein-coding genes...

Hummerich H, Little PF, Gessler M (Nov 1999). "A 7.5 Mb sequence-ready PAC contig and gene expression map of human chromosome 11p13-p14.1". Genome Research...

because of the sex chromosomes. About 1 billion base pairs in length, 3,010 contigs made 2,460 scaffolds which were placed at a chromosome level as the karyotype...

forming the macrorestriction map and different contiguous blocks (i.e. contigs). To ensure the fragments are linked, linking clones with the same rare...

Schlessinger D, Kuwano M, Wada M (April 1998). "Localization of 67 exons on a YAC contig spanning 1.5 Mb around the multidrug resistance gene region of human chromosome...

overlapping deletion in 1p36 in human neuroblastoma: a 1 Mbp cosmid and PAC contig". Genes, Chromosomes & Cancer. 31 (3): 228–39. doi:10.1002/gcc.1139. PMID 11391793...

disjoints in the reads, and as such, can lead to a higher amount of smaller contigs. Larger k-mer sizes help alleviate the problem of small repeat regions...

D, et al. (2000). "Construction of a 350-kb sequence-ready 11q13 cosmid contig encompassing the markers D11S4933 and D11S546: mapping of 11 genes and 3...

DNA strand. Freshwater-2 RNAs observed as of 2018 are present in short contig sequences, which do not allow further investigation of whether they are...

Annotation-based metrics are better assessments of assembly completeness, such as contig reciprocal best hit count. Once assembled de novo, the assembly can be used...

shows five autosomes and 1 X chromosome, spanning 257.4 megabases in 327 contigs. Lab mice previously infected with N. brasiliensis develop massive emphysema...

region on human chromosome 19: assembly and analysis of a 700-kb cosmid contig spanning the region". Genomics. 23 (3): 659–68. doi:10.1006/geno.1994.1555...

1111–1120. doi:10.14670/HH-11-608. PMID 25786037. "SNP linked to Gene (geneID:128602) Via Contig Annotation". www.ncbi.nlm.nih.gov. Retrieved 2022-07-30....

MiSeq and Ion Torrent, and the final assembly produced was composed of 18 contigs. The genome was found to be 1,886,586 bp in length, encoding for 1,736...

known as contigs, adjacent to each other. By repeating this procedure, one can hypothetically determine the correct arrangement of contigs for the entire...

region on human chromosome 19: assembly and analysis of a 700-kb cosmid contig spanning the region". Genomics. 23 (3): 659–68. doi:10.1006/geno.1994.1555...

Duh FM, et al. (April 1996). "Construction of a 600-kilobase cosmid clone contig and generation of a transcriptional map surrounding the lung cancer tumor...

Thakker RV, et al. (Nov 1997). "Construction of a 1.2-Mb sequence-ready contig of chromosome 11q13 encompassing the multiple endocrine neoplasia type 1...

1002/cbf.3033. PMID 24578328. S2CID 21018808. "SNP linked to Gene (geneID:132989) Via Contig Annotation". www.ncbi.nlm.nih.gov. Retrieved 2021-12-19....

Chaussain JL, Oley CA, Connor JM, Yates J, Price DA (Nov 1992). "A YAC contig in Xp21 containing the adrenal hypoplasia congenita and glycerol kinase...

can be freely chosen. Because of this, the tags can be assembled into contigs and the annotation of the tags can be drastically improved. Therefore,...

and protein count of 3000377 base pairs and 2848 proteins with a 123.5 contig count. Christensenella hongkongensis is a strictly anaerobic bacterium that...

vector trimming trev – trace viewing and editing gap4 – sequence assembly, contig editing, and finishing gap5 – assembly visualising, editing, and finishing...

pseudogene, thirty-one STSs, and a highly polymorphic STRP into the 7-10 Mb YAC contig of 5q34-q35". Human Genetics. 97 (3): 399–403. doi:10.1007/BF02185781. PMID 8786091...

kit, and whole-genome shotgun sequencing was carried out. Thirty-nine contigs, overlapping DNA fragments, greater in size than 200 base pairs were observed...

Pitterle DM (January 1999). "A 1.4-Mb high-resolution physical map and contig of chromosome segment 11p15.5 and genes in the LOH11A metastasis suppressor...

With this, "17,325,372 high-quality raw sequences were assembled into 15 contigs with an N50 value of 323,281 and a total genome size of 2,273,143 base...

genomatix.de. Retrieved 2020-04-30. "SNP linked to Gene (geneID:132332) Via Contig Annotation". www.ncbi.nlm.nih.gov. Retrieved 2020-05-01. "TimeTree :: The...

of the human type-I interferon gene cluster determined from a YAC clone contig". Genomics. 22 (3): 540–552. doi:10.1006/geno.1994.1427. PMID 8001965. Qi...

receptors (CCR)-2 and -3. J Immunol. 1996;157:5613–5626 Naruse et al., A YAC contig of the human CC chemokine genes clustered on chromosome 17q11.2. Genomics...

available that used NGS alone are highly fragmented, contain large numbers of contigs, and genome regions are not finished. Highly repetitive sequences, often...

map by fiber-FISH of the CLN5 region: refined assignment and long-range contig covering the critical region on 13q22". Genomics. 35 (1): 71–8. doi:10.1006/geno...

TP, Robinson PA, Markham AF (December 1996). "An EST and STS-based YAC contig map of human chromosome 9q22.3". Genomics. 38 (2): 199–205. doi:10.1006/geno...

"One-megabase yeast artificial chromosome and 400-kilobase cosmid-phage contigs containing the von Hippel-Lindau tumor suppressor and Ca(2+)-transporting...

Syndrome Type I Alitalo T, Francis F, Kere J, et al. (1995). "A 6-Mb YAC contig in Xp22.1-p22.2 spanning the DXS69E, XE59, GLRA2, PIGA, GRPR, CALB3, and...

region on human chromosome 19: assembly and analysis of a 700-kb cosmid contig spanning the region". Genomics. 23 (3): 659–68. doi:10.1006/geno.1994.1555...

(draft) genome sequence is produced by combining the information sequenced contigs and then employing linking information to create scaffolds. Scaffolds are...

sequenced using 16S rRNA. The chromosome of S. humi is 3.0Mb long, contains 4 contigs, and is predicted to be composed of 2981 genes. The DNA G-C content range...

reads with greatest overlap, 3) assembly of overlapping reads into larger contigs, and 4) repeat. These algorithms typically do not work well for larger...

is 64.5 ± 0.3%. The genome size of D. alcoholivorans is 5.1 Mb and 65 contigs. A partial sequence of 1,654 base pairs is known of the 16S ribosomal RNA...

of the interleukin-1 gene cluster: construction of an integrated YAC/PAC contig and a partial transcriptional map in the region of chromosome 2q13". Genomics...

of a strain, S. kunmingensis TFRC-KFRI-1 assembled its genome into 12 contigs with a total size of about 4.76 megabases (Mb). The GC content was reported...

Lench NJ, Telford EA, Andersen SE, et al. (1997). "An EST and STS-based YAC contig map of human chromosome 9q22.3". Genomics. 38 (2): 199–205. doi:10.1006/geno...

of the human type-I interferon gene cluster determined from a YAC clone contig". Genomics. 22 (3): 540–552. doi:10.1006/geno.1994.1427. PMID 8001965. Rönnblom...

Matsumoto K, Cho R, Lyons PA, Levy ER, et al. (May 1997). "A 2-Mb YAC contig and physical map of the natural killer gene complex on mouse chromosome...

Mbp of raw reads that each contained 36 bp, which were assembled into 95 contigs using GS20 reads. These reads were assembled in 8616 overlapping sequences...

subtraction, the remaining sequences are clustered into non-redundant contigs and aligned to known pathogen sequences using low-stringency parameters...

include genomic interval data (a frame of reference, e.g., chromosome or contig name, and start and stop positions), allowing these data to be integrated...

approaches to identify viral contigs or viral genomes from a microbial metagenome.  Novel tools to identify putative viral contigs, such as VirSorter and VirFinder...

rDNA sequences. H. noricense genome, strain CBA1132, composed of four contigs containing 3,012,807 base pairs, approximately 3,084 gene coding sequences...

technique gathers small fragments of overlapping DNA sequences called contigs. The contigs gathered from Illumina were then delivered to the DOE Joint Genome...

Spacers from isolate microbial genomes with matches to metagenomic viral contigs (mVCs) were identified for 4.4% of the viral groups and 1.7% of singletons...

celrep.2014.12.015. PMID 25558065. "SNP linked to Gene (geneID:158293) Via Contig Annotation". www.ncbi.nlm.nih.gov. Retrieved 2020-12-19. Alazami AM, Patel...

Hummerich H, Little PF, Gessler M (November 1999). "A 7.5 Mb sequence-ready PAC contig and gene expression map of human chromosome 11p13-p14.1". Genome Res. 9...

Mb Smith-Magenis syndrome critical interval: transcription map, genomic contig, and candidate gene analysis". Eur. J. Hum. Genet. 9 (12): 892–902. doi:10...

congenital - consensus sequence - conservative substitution - conserved - contig - coproporphyrinogen dehydrogenase - cortisone alpha-reductase - cosmid...

families and genera. From this analysis, it was found that of the viral contigs recovered, more than half were classified within the viral order Picornavirales...

S, Howe JR, et al. (1993). "A 1.5-megabase yeast artificial chromosome contig from human chromosome 10q11.2 connecting three genetic loci (RET, D10S94...

Ronsiek M, Korthaus D, Baer K, Wuttke M, Jockusch H (Mar 1996). "YAC contigs of the Rab1 and wobbler (wr) spinal muscular atrophy gene region on proximal...

EV, Opdenakker G, Gunge N, Sakaki Y, Iio M, Miura R (Feb 1997). "A YAC contig of the human CC chemokine genes clustered on chromosome 17q11.2". Genomics...

McMillan T, Liu J, Cole CC, White J, Alt FW, Jackson SP (1996). "A YAC contig encompassing the XRCC5 (Ku80) DNA repair gene and complementation of defective...

expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization". Plant Physiology. 134 (4):...

of sequences on a reference sequence between a reference sequence and contigs, between two sequences or between two sets of sequences finding of exact...

4103/0366-6999.177996. PMC 4804413. PMID 26960370. "SNP linked to Gene (geneID:85013) Via Contig Annotation". www.ncbi.nlm.nih.gov. Retrieved May 2, 2020....

save DNAs, proteins, and citations edit chromatogram data, assemble into contigs Bioinformatics Cloning vector Computational biology Expression vector List...

region on human chromosome 19: assembly and analysis of a 700-kb cosmid contig spanning the region". Genomics. 23 (3): 659–68. doi:10.1006/geno.1994.1555...

sequencing projects at varying stages of assembly, including complete contigs and annotated, fully assembled sequence. Data relating to transcriptomics...

identify DE contigs after performing de novo transcriptome assembly. While performing DE analysis on isoforms or contigs, different isoform/contig groups have...

Medicine. Paris MJ, Williams BR (Jan 2001). "Characterization of a 500-kb contig spanning the region between c-Ha-Ras and MUC2 on chromosome 11p15.5". Genomics...

PMC 12201122. PMID 8207046. S2CID 1257221. "Homo sapiens chromosome 6 genomic contig, GRCh37.p13 Primary Assembly". 2013-08-13. {{cite journal}}: Cite journal...

Philip E. (1994), "An algorithm based on graph theory for the assembly of contigs in physical mapping of DNA", Bioinformatics, 10 (3): 309–317, doi:10...

from 43-127 and Quast using N50 and L50 scores and the lowest quantity of contigs greater than 1000 bp. Annotation of these assemblies was done using RSAT...

Butler, Derek; Pirovano, Walter (2011-02-15). "Scaffolding pre-assembled contigs using SSPACE". Bioinformatics. 27 (4): 578–579. doi:10.1093/bioinformatics/btq683...

nlm.nih.gov. Retrieved 2019-05-12. "SNP linked to Gene (geneID:56269) Via Contig Annotation". www.ncbi.nlm.nih.gov. Retrieved 2019-05-12. Portal: Biology...

and meganephridia present anterior to xiii." It has at least 143,281 contigs and one extracellular CYGB globin gene. Specimens east of the Great Smoky...

The draft genome of Thermocrinis jamiesonii is 1,315,625 bp long in 10 contigs. It encodes for 1,463 genes, 1,415 of which are protein-coding, 43 tRNA...

MeSH E05.393.183.620 – physical chromosome mapping MeSH E05.393.183.620.160 – contig mapping MeSH E05.393.183.620.405 – radiation hybrid mapping MeSH E05.393...

"Systematic sequencing of the human HLA-A/HLA-F region: establishment of a cosmid contig and identification of a new gene cluster within 37 kb of sequence". Genomics...

reference genome, or performs de novo assembly of the reads into transcript contigs and supercontigs The first strategy maps reads to reference genomes in...

or in pairs. TMA-10 is the type strain (ATCC 33938). The genome has 15 contigs, 2,508,511 base pairs, and GC content of approximately 42.5%. K. R. Sowers...

of the interleukin-1 gene cluster: construction of an integrated YAC/PAC contig and a partial transcriptional map in the region of chromosome 2q13". Genomics...

1007/s10620-013-2663-4. PMID 23625283. S2CID 28755082. "SNP linked to Gene (geneID:114926) Via Contig Annotation". www.ncbi.nlm.nih.gov. Retrieved 2020-12-19....

Röijer E, Voz M, Meyen E, Stenman G, Van de Ven WJ (Nov 1997). "A 2-Mb YAC contig and physical map covering the chromosome 8q12 breakpoint cluster region...

(July 1995). "Construction of a 2.8-megabase yeast artificial chromosome contig and cloning of the human methylthioadenosine phosphorylase gene from the...

high-resolution integrated map spanning the SDHD gene at 11q23: a 1.1-Mb BAC contig, a partial transcript map and 15 new repeat polymorphisms in a tumour-suppressor...

can deliver higher raw accuracy reads which when aligned to form color contigs can deliver reference sequences where 2 base encoding can be better leveraged...

The GC-content of strain W11-5 T is 62.62%. Strain W11-5T is made of 42 contigs (N90 = 19) of 4,137,438 bp. Results from automatic gene annotation, which...

breakpoints associated with premature ovarian failure (POF) map to a 15-Mb YAC contig spanning Xq21". Genomics. 40 (1): 123–31. doi:10.1006/geno.1996.4542. PMID 9070928...

WorkBench.[permanent dead link] "SNP linked to Gene (geneID:158401) Via Contig Annotation". NCBI dbSNP. "PELE". SDSC Biology WorkBench.[permanent dead...

scaffolds, (2) the FASTA file format should be used, having a unique label per contig, (3) preferably gene predictions should be present (in this case, accepted...

Francke, U. (January 2000). "A physical map, including a BAC/PAC clone contig, of the Williams-Beuren syndrome--deletion region at 7q11.23". American...

Brzustowicz LM (July 1993). "Construction of a yeast artificial chromosome contig spanning the spinal muscular atrophy disease gene region". Proceedings of...

indicates close relatedness to bat coronavirus. "SNP linked to Gene (geneID:55116) Via Contig Annotation". www.ncbi.nlm.nih.gov. Retrieved 2020-08-02....

NCBI". www.ncbi.nlm.nih.gov. Retrieved 2020-05-03. "SNP linked to Gene (geneID:26152) Via Contig Annotation". www.ncbi.nlm.nih.gov. Retrieved 2020-05-03....

2001-02-24. Retrieved 2016-05-01. snpdev. "SNP linked to Gene (geneID:84865) Via Contig Annotation". www.ncbi.nlm.nih.gov. Retrieved 2016-05-01. "RBPDB: The database...

Krause S, Matysiak-Scholze U, Dierbach H, Boehm T (May 1995). "YAC/P1 contigs defining the location of 56 microsatellite markers and several genes across...

performed on DNA extracted from Psychromonas antarctica strain DSM 10704. 300 contigs were assembled, with a total length of 3,916,717 bp (base pairs), and 95x...

high-quality reference genome for L. lupina (about 49 Mb assembled into 31 contigs). In that same sample, analysis of sequencing depth and genetic variation...

overlapping sequence information, thereby reconstructing contiguous sequences (contigs), which was first exemplified by the complete structure of a plant DNA...