In enzymology , a D-amino-acid transaminase (EC 2.6.1.21 ) is an enzyme that catalyzes the chemical reaction :
D-alanine + 2-oxoglutarate
⇌
{\displaystyle \rightleftharpoons }
pyruvate + D-glutamate
Thus, the two substrates of this enzyme are D-alanine and 2-oxoglutarate , whereas its two products are pyruvate and D-glutamate .
This enzyme belongs to the family of transferases , specifically the transaminases , which transfer nitrogenous groups. The systematic name of this enzyme class is D-alanine:2-oxoglutarate aminotransferase . Other names in common use include D-aspartate transaminase , D-alanine aminotransferase , D-aspartic aminotransferase , D-alanine-D-glutamate transaminase , D-alanine transaminase , and D-amino acid aminotransferase . This enzyme participates in 6 metabolic pathways : lysine degradation , arginine and proline metabolism , phenylalanine metabolism , D-arginine and D-ornithine metabolism, D-alanine metabolism, and peptidoglycan biosynthesis. It employs one cofactor , pyridoxal phosphate .
Structural studies
As of late 2007, 8 structures have been solved for this class of enzymes, with PDB accession codes 1A0G , 1DAA , 1G2W , 2DAA , 2DAB , 3DAA , 4DAA , and 5DAA .
References
Thorne CB, Gomez CG, Housewright RD (1955). "Transamination of D-amino acids by Bacillus subtilis" . J. Bacteriol . 69 (3): 357– 62. doi :10.1128/JB.69.3.357-362.1955 . PMC 357541 . PMID 14367287 .
Thorne CB, Molnar DM (1955). "D-Amino acid transamination in bacillus anthracis" . J. Bacteriol . 70 (4): 420– 6. doi :10.1128/JB.70.4.420-426.1955 . PMC 386242 . PMID 13263311 .
Martinez-Carrion M, Jenkins WT (1965). "D-Alanine-D-glutamate transaminase. I. Purification and characterization" . J. Biol. Chem . 240 (9): 3538– 46. doi :10.1016/S0021-9258(18)97177-2 . PMID 4953710 .
Ogawa T, Fukuda M, Sasaoka K (1973). "Occurrence of D-amino acid aminotransferase in pea seedlings". Biochem. Biophys. Res. Commun . 52 (3): 998– 1002. doi :10.1016/0006-291X(73)91036-X . PMID 4710577 .
Yonaha K, Misono H, Yamamoto T, Soda K (1975). "D-amino acid aminotransferase of Bacillus sphaericus. Enzymologic and spectrometric properties" . J. Biol. Chem . 250 (17): 6983– 9. doi :10.1016/S0021-9258(19)41029-6 . PMID 1158891 .
Tanizawa K, Masu Y, Asano S, Tanaka H, Soda K (1989). "Thermostable D-amino acid aminotransferase from a thermophilic Bacillus species. Purification, characterization, and active site sequence determination" . J. Biol. Chem . 264 (5): 2445– 9. doi :10.1016/S0021-9258(19)81633-2 . PMID 2914916 .
Fotheringham IG, Bledig SA, Taylor PP (1998). "Characterization of the genes encoding D-amino acid transaminase and glutamate racemase, two D-glutamate biosynthetic enzymes of Bacillus sphaericus ATCC 10208" . J. Bacteriol . 180 (16): 4319– 23. doi :10.1128/JB.180.16.4319-4323.1998 . PMC 107435 . PMID 9696787 .
Yoshimura T, Soda K, Ringe D, Petsko G, Manning JM (1998). "Substrate inhibition of D-amino acid transaminase and protection by salts and by reduced nicotinamide adenine dinucleotide: isolation and initial characterization of a pyridoxo intermediate related to inactivation". Biochemistry . 37 (9): 2879– 88. doi :10.1021/bi972842p . PMID 9485439 .
Sugio S, Petsko GA, Manning JM, Soda K, Ringe D (1995). "Crystal structure of a D-amino acid aminotransferase: how the protein controls stereoselectivity". Biochemistry . 34 (30): 9661– 9. doi :10.1021/bi00030a002 . PMID 7626635 .
Activity Regulation Classification Kinetics Types