Eudes returned to Furacão in 2003, also as Mário Sérgio's assistant, but was relieved of his duties in September of that year.[3] On 24 December, he joined Coritiba to work as an assistant of Antônio Lopes.[4]
Eudes started working with Cuca in 2005, also as an assistant.[5] In 2019, after being released by Santos,[6] he opted not to join Cuca's staff at São Paulo in order to achieve a managerial license.[7]
On 27 August 2019, Eudes was named manager of Remo.[8] On 15 October, after only four matches, he was sacked.[9]
In February 2020, Eudes took over Perilima.[10] He left the club at the end of the 2020 Campeonato Paraibano, but reached an agreement with the board to return as manager for the 2021 campaign.[11]
Eudes returned to Santos on 20 August 2020, also as Cuca's assistant.[12] On 10 November, it was announced that he had tested positive for COVID-19.[13]
^"Eudes Pedro é dispensado do Atlético" [Eudes Pedro is released from Atlético] (in Brazilian Portuguese). Furacão.com. 9 September 2020. Retrieved 10 November 2020.