At the May Assembly of Serbs in Sremski Karlovci in 1848, from the balcony of the Sremski Karlovci town hall, he was appointed Patriarch of the Serbs, while Stevan Šupljikac was chosen as the first Duke (Voivode) of Serbian Vojvodina. Apart from being a spiritual leader, Rajačić shared political and military leadership of Serbs at the time of war.[citation needed]
He became administrator of Serbian Vojvodina, and was head of the new Serb government (praviteljstvo) of Vojvodina. Rajačić formed an alliance with the House of Habsburg after being promised autonomy for opposing the 1848 Hungarian Revolution. After the Hungarians were defeated, Rajačić was nominated civil commissioner of Vojvodina by the Austrian Empire.[citation needed]
Rajačić assisted the educational development of the Serb people in the Austrian Empire. In the time when he was metropolitan of Sremski Karlovci, many new Serbian schools were opened. He opened the Patriarchal Library and Print Works. Rajačić spent much of his energy attempting to bring Vojvodina under Serbian administration. On 5 June 1848, on the day of Josip Jelačić's inauguration as Ban of Croatia, Jelačić was appointed Ban in the Patriarch's presence due to Juraj Haulik's current absence from Zagreb.[2]