Module:CineMol/api/testcases
| This is the test cases page for the module Module:CineMol/api. Results of the test cases. |
-- This is a port of CineMol to lua
-- CineMol https://github.com/moltools/CineMol was written by David Meijer, Marnix H. Medema & Justin J. J. van der Hooft and is MIT licensed
-- Please consider any edits made to this page as dual licensed MIT & CC-BY-SA 4.0
-- Unit tests for [[Module:CineMol/api]]. Click talk page to run tests.
require('strict')
local p = require('Module:UnitTests')
local api = require( 'Module:CineMol/api' )
local Atom = api.Atom
local Bond = api.Bond
local Look = api.Look
local Style = api.Style
local draw_atoms_in_spacefilling_style = api.draw_atoms_in_spacefilling_style
local draw_bonds_in_tube_style = api.draw_bonds_in_tube_style
local draw_bonds_in_wireframe_style = api.draw_bonds_in_wireframe_style
local draw_molecule = api.draw_molecule
local filter_atoms_and_bonds = api.filter_atoms_and_bonds
local CylinderCapType = require( 'Module:CineMol/geometry' ).CylinderCapType
local Scene = require( 'Module:CineMol/model' ).Scene
local Color = require( 'Module:CineMol/style' ).Color
function p:test_filter_atoms_and_bonds()
-- """Test the filter_atoms_and_bonds function without filtering."""
local atoms = {
Atom(0, "C", {0, 0, 0}),
Atom(1, "H", {1, 0, 0}),
Atom(2, "H", {0, 1, 0}),
Atom(3, "H", {0, 0, 1})
}
local bonds = {
Bond(0, 1, 1),
Bond(0, 2, 1),
Bond(0, 3, 1),
}
local filtered_atoms, filtered_bonds = filter_atoms_and_bonds(atoms, bonds)
self:equals("filtered atoms", #filtered_atoms, 4)
self:equals("filtered bonds", #filtered_bonds, 3)
end
function p:test_filter_atoms_and_bonds_with_filtering()
local atoms = {
Atom(0, "C", {0, 0, 0}),
Atom(1, "H", {1, 0, 0}),
Atom(2, "H", {0, 1, 0}),
Atom(3, "H", {0, 0, 1})
}
local bonds = {
Bond(0, 1, 1),
Bond(0, 2, 1),
Bond(0, 3, 1),
}
local filtered_atoms, filtered_bonds = filter_atoms_and_bonds(atoms, bonds, {"H"})
self:equals("filtered atoms", #filtered_atoms, 1)
self:equals("filtered bonds", #filtered_bonds, 0)
end
function p:test_filter_atoms_and_bonds_with_filtering_out_all_atoms()
local atoms = {
Atom(0, "C", {0, 0, 0}),
Atom(1, "H", {1, 0, 0}),
Atom(2, "H", {0, 1, 0}),
Atom(3, "H", {0, 0, 1})
}
local bonds = {
Bond(0, 1, 1),
Bond(0, 2, 1),
Bond(0, 3, 1),
}
local filtered_atoms, filtered_bonds = filter_atoms_and_bonds(atoms, bonds, {"C", "H"})
self:equals("filtered atoms", #filtered_atoms, 0)
self:equals("filtered bonds", #filtered_bonds, 0)
end
function p:test_draw_bonds_in_wireframe_style_without_supplying_bonds()
local scene = Scene()
local atoms = {
Atom(0, "C", {0, 0, 0}),
Atom(1, "H", {1, 0, 0}),
Atom(2, "H", {0, 1, 0}),
Atom(3, "H", {0, 0, 1})
}
draw_bonds_in_wireframe_style(scene, atoms, {})
self:equals("nodes", #scene.nodes, 0)
end
function p:test_draw_bonds_in_wireframe_style()
local scene = Scene()
local atoms = {
Atom(0, "C", {0, 0, 0}),
Atom(1, "H", {1, 0, 0}),
Atom(2, "H", {0, 1, 0}),
Atom(3, "H", {0, 0, 1})
}
local bonds = {
Bond(0, 1, 1),
Bond(0, 2, 1),
Bond(0, 3, 1),
}
draw_bonds_in_wireframe_style(scene, atoms, bonds)
self:equals('nodes', #scene.nodes, 6) -- 3 x 2 half bonds.
end
function p:test_draw_atoms_in_spacefilling_style()
local scene = Scene()
local atoms = {
Atom(0, "C", {0, 0, 0}),
Atom(1, "H", {1, 0, 0}),
Atom(2, "H", {0, 1, 0}),
Atom(3, "H", {0, 0, 1})
}
draw_atoms_in_spacefilling_style(scene, atoms, Look.CARTOON, Color(255, 255, 255), 0.05)
self:equals("nodes", #scene.nodes, 4)
end
function p:test_draw_atoms_in_tube_style()
local scene = Scene()
local atoms = {
Atom(0, "C", {0, 0, 0}),
Atom(1, "H", {1, 0, 0}),
Atom(2, "H", {0, 1, 0}),
Atom(3, "H", {0, 0, 1})
}
draw_bonds_in_tube_style(
scene,
atoms,
{},
Style.TUBE,
Look.CARTOON,
CylinderCapType.NO_CAP,
Color(255, 255, 255),
0.05
)
self:equals("nodes", #scene.nodes, 0)
end
function p:test_draw_molecule_in_spacefilling_style()
local svg = draw_molecule(
{
Atom(0, "C", {0, 0, 0}),
Atom(1, "H", {1, 0, 0}),
Atom(2, "H", {0, 1, 0}),
Atom(3, "H", {0, 0, 1})
},
{
Bond(0, 1, 1),
Bond(0, 2, 1),
Bond(0, 3, 1),
},
Style.SPACEFILLING,
Look.CARTOON,
50
)
self:equals("objects", #svg.objects, 4)
self:equals("fills", #svg.fills, 4)
end
function p:test_draw_molecule_in_spacefilling_style_glossy()
local svg = draw_molecule(
{
Atom(0, "C", {0, 0, 0}),
Atom(1, "H", {1, 0, 0}),
Atom(2, "H", {0, 1, 0}),
Atom(3, "H", {0, 0, 1})
},
{
Bond(0, 1, 1),
Bond(0, 2, 1),
Bond(0, 3, 1),
},
Style.SPACEFILLING,
Look.GLOSSY,
50
)
self:equals("objects", #svg.objects, 4)
self:equals("fills", #svg.fills, 4)
end
function p:test_draw_molecule_in_tube_style()
local svg = draw_molecule(
{
Atom(0, "C", {0, 0, 0}),
Atom(1, "H", {1, 0, 0}),
Atom(2, "H", {0, 1, 0}),
Atom(3, "H", {0, 0, 1})
},
{
Bond(0, 1, 1),
Bond(0, 2, 1),
Bond(0, 3, 1),
},
Style.TUBE,
Look.CARTOON,
50
)
self:equals("objects", #svg.objects, 6)
self:equals("fills", #svg.fills, 6)
end
function p:test_draw_molecule_in_wireframe_style()
local svg = draw_molecule(
{
Atom(0, "C", {0, 0, 0}),
Atom(1, "H", {1, 0, 0}),
Atom(2, "H", {0, 1, 0}),
Atom(3, "H", {0, 0, 1})
},
{
Bond(0, 1, 1),
Bond(0, 2, 1),
Bond(0, 3, 1),
},
Style.WIREFRAME,
Look.CARTOON,
50
)
self:equals("objects", #svg.objects, 6)
self:equals("fills", #svg.fills, 6)
end
function p:test_draw_molecule_with_single_colored_triple_bond_in_ball_and_stick_style()
local svg = draw_molecule(
{
Atom(0, "C", {0, 0, 0}),
Atom(1, "C", {1, 0, 0}),
},
{
Bond(0, 1, 3)
},
Style.BALL_AND_STICK,
Look.CARTOON,
50
)
self:equals("objects", #svg.objects, 5)
self:equals("fills", #svg.fills, 5)
end
function p:test_draw_molecule_with_multi_colored_triple_bond_in_ball_and_stick_style()
local svg = draw_molecule(
{
Atom(0, "C", {0, 0, 0}),
Atom(1, "N", {1, 0, 0}),
},
{
Bond(0, 1, 3)
},
Style.BALL_AND_STICK,
Look.CARTOON,
50
)
self:equals("objects", #svg.objects, 8)
self:equals("fills", #svg.fills, 8)
end
function p:test_draw_molecule_with_single_and_triple_bonds_in_ball_and_stick_style()
local svg = draw_molecule(
{
Atom(0, "C", {0, 0, 0}),
Atom(1, "H", {1, 0, 0}),
Atom(2, "N", {0, 1, 0}),
},
{
Bond(0, 1, 1),
Bond(0, 2, 3),
},
Style.BALL_AND_STICK,
Look.CARTOON,
50
)
self:equals("objects", #svg.objects, 11)
self:equals("fills", #svg.fills, 11)
end
return p
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