Northwards, the sea is connected to the Visayan Sea. Southwards, it is connected to the Bohol Sea (also called the Mindanao Sea) in two ways: to the southwest by the Cebu Strait (and its three channels, the Mactan, the Olango, and the Hilutangan), and to the southeast by the Canigao Channel.
The Camotes Sea also contains the Danajon Bank, which is a double barrier reef in the Philippines, which is a very rare geological formation, and there are only 6 double barrier reefs in the world. It comprises two sets of large coral reefs that formed offshore on a submarine ridge due to a combination of favorable tidal currents and coral growth in the area.