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sequence (genome). Eukaryotic transcriptomes tend to be more complex than bacterial transcriptomes and the transcriptomes of multicellular eukaryotes are...

Transcriptome instability is a genome-wide, pre-mRNA splicing-related characteristic of certain cancers. In general, pre-mRNA splicing is dysregulated...

genes, were published, and by 2015 transcriptomes had been published for hundreds of individuals. Transcriptomes of different disease states, tissues...

000th and 1/10,000th of the price, respectively. Prior to this, only transcriptomes of organisms that were of broad interest and utility to scientific research...

Single-cell transcriptomics refers to the quantification and analysis of the transcriptomes of individual cells. Single-cell transcriptomics makes it possible to...

traditionally been used as a type of teeth-cleaning twig. The neem genome and transcriptomes from various organs have been sequenced. Expressed sequence tags were...

Graham SW, et al. (One Thousand Plant Transcriptomes Initiative) (October 2019). "One thousand plant transcriptomes and the phylogenomics of green plants"...

Schaeffer L, Wold B (July 2008). "Mapping and quantifying mammalian transcriptomes by RNA-Seq". Nature Methods. 5 (7): 621–8. doi:10.1038/nmeth.1226. PMID 18516045...

most commonly used in bioinformatic studies to assemble genomes or transcriptomes. Two common types of de novo assemblers are greedy algorithm assemblers...

diseases. A transcriptome is the sum of all RNA transcripts that are present in a given cell, tissue, or organ within an organism. Transcriptomes include...

Digital transcriptome subtraction (DTS) is a bioinformatics method to detect the presence of novel pathogen transcripts through computational removal...

genomes, transcriptomes, proteomes, and other high-throughput omics datasets. His lab has contributed to understanding the genomes and transcriptomes of yeast...

Mushroom-feeding Drosophila (mycophagous Drosophila) are a subset of Drosophila flies that have highly specific mushroom-breeding ecologies. Often these...

Leebens-Mack, J.H.; et al. (One Thousand Plant Transcriptomes Initiative) (October 2019). "One thousand plant transcriptomes and the phylogenomics of green plants"...

The Human-transcriptome DataBase for Alternative Splicing (H-DBAS) is a database of alternatively spliced human transcripts based on H-Invitational. Alternative...

distantly related red algal hosts. As enlisted in realDB, 27 complete transcriptomes and 10 complete genomes sequences of red algae are available. Listed...

Sagaria in the Ranunculaceae. In 2019, a phylogeny based on genomes and transcriptomes from 1,153 plant species was proposed. The placing of algal groups is...

D.; Hut, Roelof A.; Panda, Satchidananda (2024-09-03). "Multi-organ transcriptome atlas of a mouse model of relative energy deficiency in sport". Cell...

valuable red "rosewood" timber. University of Oxford published the transcriptomes of Dalbergia oliveri and five other Dalbergia spp. It was found that...

Coronary artery disease (CAD), also called coronary heart disease (CHD), or ischemic heart disease (IHD), is a type of heart disease involving the reduction...

expressed genes. Out of these genes, 12,346 belonged to the venom gland transcriptome, which included 139 genes from 33 toxin gene families. Additionally...

and mechanisms underlying complex diseases. He was a developer of the transcriptome-wide association study (TWAS) methodology (PrediXcan), which integrates...

and unbiased analysis of the transcriptome. Normally, RNA-seq is only capable of capturing a snapshot of the transcriptome at the time of sample collection...

sequencing machine, allowing coverages of >108. Deep sequencing of transcriptomes, also known as RNA-Seq, provides both the sequence and frequency of...

into cDNA after emulsion breakage. Sequencing this cDNA produces the transcriptomes of all the single nuclei being looked at and these can be used for many...

largest known genome of an RNA virus. It was discovered by inspecting the transcriptomes of the planarian flatworm Schmidtea mediterranea and is the first known...

advantageous genes to overcome extreme cold and starvation periods. Transcriptome sequencing has identified two genes that are under positive selection:...

Lee S, et al. (August 2017). "A pathology atlas of the human cancer transcriptome". Science. 357 (6352) eaan2507. Bibcode:2017Sci...357n2507U. doi:10...

and forest landscape restoration. University of Oxford published the transcriptomes of Dalbergia cochinchinensis and five other Dalbergia spp. It was found...

M.; Barker, M.; Carpenter, E.; et al. (2019). "One thousand plant transcriptomes and the phylogenomics of green plants". Nature. 574 (7780): 679–685...

Yang, Chaowei; Zhou, Haijiang; Qiao, Jie (2021). "Full-length SMRT transcriptome sequencing and microsatellite characterization in Paulownia catalpifolia"...

Smulian AG, Slaven BE, Sesterhenn T, Arnold J, Staben C, et al. (2007). "Transcriptome of Pneumocystis carinii during fulminate infection: carbohydrate metabolism...

and from the nucleus. The study found that CMX compartmentalizes the transcriptome, proteome, and metabolome, and that CMX-associated ribosomes exhibit...

Proterozoic. In 2019, a phylogeny of the Archaeplastida based on genomes and transcriptomes from 1,153 plant species was proposed. The placing of algal groups is...

Brenda; Perkin, Lindsey C.; Lorenzen, Marcé D.; Dossey, Aaron T. (2020). "Transcriptome analysis of life stages of the house cricket, Acheta domesticus, to...

biological processes. Single-cell omics technologies has extended beyond the transcriptome to profile diverse physical-chemical properties at single-cell resolution...

CA. Hogenesch started work on the human transcriptome and the mRNA characterization of the transcriptomes of humans, mice, and rats, which he would...

a Tree: A Robust Phylogeny for Terebelliformia (Annelida) Based on Transcriptomes, Molecular and Morphological Data". Biology. 9 (4): 73. doi:10.3390/biology9040073...

Markers for Molecular Breeding in Taiwan Tilapia (Oreochromis spp.) via Transcriptome Analysis". Animals. 11 (12): 3538. Bibcode:2021Anima..11.3538C. doi:10...

G.; Duong, Thuy-Yen; Wang, Xu; Dunham, Rex A. (2021). "Comparative Transcriptome Analysis During the Seven Developmental Stages of Channel Catfish (Ictalurus...

(Hemibagrus wyckioides) based on the chromosome-level genomes and comparative transcriptomes". International Journal of Biological Macromolecules. 232 (1): 31–35...

qualities of all neurons: electrophysiology, morphology, and the individual transcriptome of the cells. Besides being universal this classification has the advantage...

tobacco consumption is rising by 3.4% per year. Smoking alters the transcriptome of the lung parenchyma; the expression levels of a panel of seven genes...

Bidkhori G, et al. (August 2017). "A pathology atlas of the human cancer transcriptome". Science. 357 (6352) eaan2507. Bibcode:2017Sci...357n2507U. doi:10...

at the tensan silk genes in more detail a de novo genome and set of transcriptomes have been sequenced, producing a 700Mb reference with 15,481 genes....

and have evolved through horizontal gene transfer. An additional 19 transcriptomes were published in 2018. A large number of gene families previously thought...

competence genes: mapping of the SigH, ComK1 and ComK2 regulons by transcriptome sequencing". Molecular Microbiology. 94 (3): 557–579. doi:10.1111/mmi...

The 1000 Plant Transcriptomes Initiative (1KP) was an international research effort to establish the most detailed catalogue of genetic variation in plants...

The genus Cathaya was included in some older studies, but based on transcriptome analysis, is now considered closer to Pinus and Picea. The split of...

(June 2019). "De novo sequencing analysis of the Rosa roxburghii fruit transcriptome reveals putative ascorbate biosynthetic genes and EST-SSR markers"....

pre-harvest bagging treatment on kiwifruit appearance and quality via transcriptome and metabolome analyses". Food Research International. 173 (Pt 1) 113276...

Pontén, Fredrik (2015-01-01). "The human gastrointestinal tract-specific transcriptome and proteome as defined by RNA sequencing and antibody-based profiling"...

monophyletic. A recent comprehensive phylogeny based on analyses of data from transcriptomes and mitochondrial genomes found the following relationships within Orthoptera...

UniGene was a NCBI database of the transcriptome and thus, despite the name, not primarily a database for genes. Each entry is a set of transcripts that...

"Candidate chemosensory genes identified in Colaphellus bowringi by antennal transcriptome analysis". BMC Genomics. 16 1028. doi:10.1186/s12864-015-2236-3. PMC 4667470...

Dickerman, Allan W.; Beers, Eric P. (June 2005). "The Xylem and Phloem Transcriptomes from Secondary Tissues of the Arabidopsis Root-Hypocotyl". Plant Physiology...

not resolve the haplotype but instead analyzed the transcriptome. The complete genome and transcriptome of the Kyoto strain of HeLa cells were sequenced...

subgenus Drosophila. A number of species have had their genomes or transcriptomes sequenced for evolutionary studies using Drosophila. The following species...

circulatory system. Masamoto Y, Piraino S, Miglietta MP (December 2019). "Transcriptome Characterization of Reverse Development in Turritopsis dohrnii (Hydrozoa...

Full-Parasites is a transcriptome database of apicomplexa parasites. apicomplexa Tuda, Josef; Mongan Arthur E; Tolba Mohammed E M; Imada Mihoko; Yamagishi...

Roychowdhury S, Chinnaiyan AM (2016). "Translating cancer genomes and transcriptomes for precision oncology". CA. 66 (1): 75–88. doi:10.3322/caac.21329....

Xenacoelomorpha, and could form the Xenambulacraria group, but recent transcriptome analyses concluded that the phylum Xenacoelomorpha is the sister group...

Kampf C, Edlund K, Sivertsson Å, et al. (2014-12-31). "The kidney transcriptome and proteome defined by transcriptomics and antibody-based profiling"...

A transcriptome in vivo analysis tag (TIVA tag) is a multifunctional, photoactivatable mRNA-capture molecule designed for isolating mRNA from a single...

"Pistacia_vera - Ensembl Genomes 51". Zeng, L., et al. Whole genomes and transcriptomes reveal adaptation and domestication of pistachio. Genome Biol 20, 79...

January 2026). "Phylogenomic tree of Cercozoa based on single-cell transcriptomes from 100 uncultured cells". BMC Biology. 24 (1) 55. doi:10.1186/s12915-026-02536-4...

latest date for the adoption of clothing by humans. However, recent transcriptome analyses casts doubt on whether lice provide a means to date the origin...

phylum was considered to be a member of the deuterostomes, but later transcriptome analyses have suggested that the phylum Xenacoelomorpha is a sister...

2024 transcriptomes study added Z. paucifoliolata to the Cunaria clade. The 2019 DNA study identified four clades in what the 2024 transcriptomes study...

nutrient absorption in the bone-eating worm Osedax japonicus inferred from transcriptome and gene expression analyses". BMC Evolutionary Biology. 17 (1): 17...

genome and the mutation rates for the sites are hampered. Hence, greater transcriptome plasticity has come at the cost of slower genome evolution. The genome...

as an example of a protozoan and also as an example of symbiosis. A transcriptome sequence is determined. Moreover, a combination of long-read sequencing...

Syndrome Change Conformation of Ligand-Receptor Complex and Altered Transcriptome Profile". Endocrinology. 161 (6) bqaa050. doi:10.1210/endocr/bqaa050...

"Understanding and utilising mammalian venom via a platypus venom transcriptome". Journal of Proteomics. 72 (2): 155–164. doi:10.1016/j.jprot.2008.12...

(April 2004). "A gene atlas of the mouse and human protein-encoding transcriptomes". Proceedings of the National Academy of Sciences of the United States...

transcriptome database. RIKEN full-length cDNA clone and RNA-Seq data in Sorghum bicolor. S. purpuratus S. purpuratus - Developmental Transcriptomes of...

December 2022). "Structure-guided isoform identification for the human transcriptome". eLife. 11 e82556. doi:10.7554/eLife.82556. PMC 9812405. PMID 36519529...

Zhu X, et al. (January 2014). "Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals". Genome Research...

(2021). "Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram". Nature Methods. 18 (11): 1352–1362. doi:10.1038/s41592-021-01264-7...

ectrodactyly, ectodermal dysplasia, and cleft lip/palate (EEC) syndrome. The transcriptome of p63 mutant keratinocytes deviated from the normal epidermal cell...

RNA-Seq: applies next-generation sequencing techniques to sequence whole transcriptomes, which allows the measurement of relative abundance of RNA, as well...

Mark; Botella, Jose R. (2005). "Developing pineapple fruit has a small transcriptome dominated by metallothionein". Journal of Experimental Botany. 56 (409):...

Koopman to refer to certain families of microbats). Recent studies using transcriptome data have found strong support for the Yinpterochiroptera-Yangochiroptera...

Single-cell transcriptomics using single-cell RNA-Seq gave the complete transcriptome of H. pylori which was published in 2010. This analysis of its transcription...

synthesis" approach. In 2020, the transcriptome of ΦX174 was generated. Notable features of the ΦX174 transcriptome is a series of up to four relatively...

strands. It can also be used for whole-genome and region sequencing, transcriptome analysis, metagenomics, small RNA discovery, methylation profiling,...

as CO2) from the atmosphere. Because of its impact on forestry, the transcriptome and the genome of the beetle have been sequenced. It was the second...

transcriptomics technologies used to gather sequence information on transcriptomes. However the most widely used is RNA-Seq. RNA reads may be obtained...

Retrieved 7 May 2026. Sendic, Erdem (2023). "RNA m6A methylation across the transcriptome". Molecular Cell. 83 (3): 428–441. PMID 36736310. Retrieved 5 May 2026...

conservation and diversification of plant morphologies. In these studies, transcriptome conservation patterns were found to mark crucial ontogenetic transitions...

order to improve its potential use as a biofuel crop. For example, the transcriptome of pennycress has been sequenced. NRCS. "Thlaspi arvensis". PLANTS Database...

March 2014. Du, H.; Bao, Z.; Hou, R.; Wang, S.; Su, H.; et al. (2012). "Transcriptome Sequencing and Characterization for the Sea Cucumber Apostichopus japonicus...

rise to alternate transcriptional splice variants. ADAR impacts the transcriptome in editing-independent ways, likely by interfering with other RNA-binding...

S, Lotfy P, Brideau NJ, Oki J, Shokhirev MN, Hsu PD (April 2018). "Transcriptome Engineering with RNA-Targeting Type VI-D CRISPR Effectors". Cell. doi:10...

Bourguignon, Thomas (2019). "Evolution of Termite Symbiosis Informed by Transcriptome-Based Phylogenies". Current Biology. 29 (21). Elsevier BV: 3728–3734...

in general, but the first part of the sequence is established. Using transcriptome and genome mining and phylogenetic and homologous analysis, candidate...

(1 maternal, 1 paternal genome). An intriguing study surveying the transcriptome of murine brain tissues revealed over 1300 imprinted gene loci (approximately...

com. Hansen, KD; Brenner, SE; Dudoit, S (2010). "Biases in Illumina transcriptome sequencing caused by random hexamer priming". Nucleic Acids Res. 38...

organs across the Northern Hemisphere from the Eocene onwards. Based on transcriptome analysis, Keteleeria is sister to Abies, with the Pseudolariceae the...

continue to stay in G0 and perform their main functions indefinitely. The transcriptomes of several types of quiescent stem cells, such as hematopoietic, muscle...

spines; applying isopropanol to the area may help alleviate the pain. The transcriptome of the bearded fireworm was sequenced and annotated in 2015. de Kluijver...

Javier; Groenen, Martien A.M.; et al. (2013). "The duck genome and transcriptome provide insight into an avian influenza virus reservoir species". Nature...

small scale applications such as microbial genome sequencing, microbial transcriptome sequencing, targeted sequencing, amplicon sequencing, or for quality...

recognized by major databases of plant species. A 2024 study analyzing transcriptomes from 77 species of Zamia found support for a phylogenetic tree of seven...

in Microdissected Renal Tubules Identifies Nephron Segment-Specific Transcriptomes". Journal of the American Society of Nephrology. 26 (11): 2669–2677...

"NanoCAGE: A Method for the Analysis of Coding and Noncoding 5′-Capped Transcriptomes". Promoter Associated RNA. Methods in Molecular Biology. Vol. 1543....

use of quality control samples for batch effect correction in human transcriptome data". PLOS ONE. 13 (8) e0202947. Bibcode:2018PLoSO..1302947E. doi:10...

microparticles are reverse-transcribed in bulk to form single-cell transcriptomes attached to microparticles (STAMPs). Template switching of reverse-transcriptase...

the Crab Portunus trituberculatus: Gene Discovery in the Comparative Transcriptome of Different Hepatopancreas Stages Effects of estradiol on fatty acid...

determined through combinatorial genome-wide association study and transcriptome analysis". Animal Genetics. 51 (5): 741–751. doi:10.1111/age.12980....

J.; Gostinčar, C.; Gunde-Cimerman, N. (Sep 13, 2013). "Genome and transcriptome sequencing of the halophilic fungus Wallemia ichthyophaga: haloadaptations...

Pizzetti F, Casadei R (2016-09-09). "Meta-Analysis of Parkinson's Disease Transcriptome Data Using TRAM Software: Whole Substantia Nigra Tissue and Single Dopamine...

K, Schwanhäusser B, Selbach M, Landthaler M, et al. (August 2011). "Transcriptome-wide analysis of regulatory interactions of the RNA-binding protein...

Jackson CJ, Gornik SG, Waller RF (2012). "The mitochondrial genome and transcriptome of the basal dinoflagellate Hematodinium sp.: character evolution within...

Patricia E.; VandeBerg, John L.; Wang, Xu (February 15, 2023). "Blood transcriptome responses to PFOA and GenX treatment in the marsupial biomedical model...

(Indian Institute of Science) — Survival, revival, reproduction, and transcriptome of the eutardigrade Paramacrobiotus sp. BLR strain in space. Voyager...

Chen, Yu; Wang, Min; Zhao, Yuqiang; Geng, Guomin (February 15, 2019). "Transcriptome Analysis of Chinese Chestnut (Castanea mollissima Blume) in Response...

fruticulosa, C. poriodes was described as a separate species in 2024 based on transcriptomes. C. fruticulosa has historically been considered a widespread cosmopolitan...

evolution of deep-sea scale worms (Annelida: Polynoidae): insights from transcriptome comparison with a shallow-water species". Scientific Reports. 7 (1)...

termination. These studies also led to various fully assembled Artemia transcriptomes. Recently, the Artemia genome was assembled and annotated, revealing...

capable of tolerating the very high levels of alkalinity in the lake. The transcriptome of the species has been sequenced in order to better understand this...

Ceccarelli M, D'Andrea G, Giacovazzo G, Ancona N, et al. (2021). "Transcriptome Analysis in a Mouse Model of Premature Aging of Dentate Gyrus: Rescue...

Richard K. (2016-02-09). "Dictyocaulus viviparus genome, variome and transcriptome elucidate lungworm biology and support future intervention". Scientific...

ISBN 0-521-66097-1 Leebens-Mack, James H.; et al. (2019). "One thousand plant transcriptomes and the phylogenomics of green plants". Nature. 574 (7780): 679–685...

will mean these barriers no longer hold true. Any organism's entire transcriptome could be potentially sequenced in one run (for very small bacterial...

Artificially Reproduced European Eel Anguilla anguilla? Clues from the Larval Transcriptome and Gene Expression Patterns". Animals. 11 (6): 1710. doi:10.3390/ani11061710...

Daniel C.; Miller, Robert D.; Old, Julie M. (October 2021). "Single-cell transcriptome analysis of the B-cell repertoire reveals the usage of immunoglobulins...

Greenland shark revealed an abundance of LINE-like elements in its transcriptome". Czech Polar Reports. 13 (2). doi:10.5817/CPR2023-2-17. ISSN 1805-0697...

An extension of this methodology is the integration of single-cell transcriptomes to single-cell methylomes, combining single-cell bisulfite sequencing...

Sharpe, A. G.; Hughes, T. R.; Page, J. E. (2011). "The draft genome and transcriptome of Cannabis sativa". Genome Biol. 12 (10): R102. doi:10.1186/gb-2011-12-10-r102...

organoids modeling the disease or state of development in question. Transcriptome analysis has been used as an assay to examine the pathology of cerebral...

protists with one anterior and one posterior flagellum in each cell. The transcriptome of Mantamonas vickermani is estimated to be 21 megabases long, with...

Chang HY (2016). "RNA Duplex Map in Living Cells Reveals Higher-Order Transcriptome Structure". Cell. 165 (5): 1267–1279. doi:10.1016/j.cell.2016.04.028...

CITE-Seq (Cellular Indexing of Transcriptomes and Epitopes by Sequencing) is a method for performing RNA sequencing along with gaining quantitative and...

the transcriptome, which is all of the transcribed RNA within a cell type. While the exome is constant from cell-type to cell-type, the transcriptome changes...

for download. Subsequent, more complete transcriptomes were generated using Illumina sequencing. The transcriptome data can be used for the creation of in...

and its main interactor, the noncoding RNA 7SK, coregulate the axonal transcriptome of motoneurons". Proceedings of the National Academy of Sciences of...

the phytopathogenic fungus Thecaphora frezii through analysis of its transcriptome". European Journal of Plant Pathology. 164 (3): 325–335. Bibcode:2022EJPP...

T. (2015). "G&T-seq: Parallel sequencing of single-cell genomes and transcriptomes" (PDF). Nature Methods. 12 (6): 519–22. doi:10.1038/nmeth.3370. PMID 25915121...

recently Xiang et al. (2017) recovered these relationships using nuclear transcriptomes: Rosoideae has been identified as the earliest branching subfamily by...

species). EST approaches have largely been superseded by whole genome and transcriptome sequencing and metagenome sequencing. An EST results from one-shot sequencing...

Guggisberg, Alessia; Lai, Zhao; Huang, Jie; Rieseberg, Loren H. (2013). "Transcriptome divergence between introduced and native populations of Canada thistle...

et al. (March 2015). "The landscape of long noncoding RNAs in the human transcriptome". Nature Genetics. 47 (3): 199–208. Bibcode:2015NaGen..47..199I. doi:10...

another monogenean, Scutogyrus longicornis. These were the first two transcriptomes released for monogeneans of the subclass Monopisthocotylea. Mizelle...

Irigoien, X. (2016). Sex Change in Clownfish: Molecular Insights from Transcriptome Analysis. Scientific Reports, 6(1). https://doi.org/10.1038/srep35461...

but whose local functions are largely unknown. Tiling arrays aid in transcriptome mapping as well as in discovering sites of DNA/protein interaction (ChIP-chip...

primers (probes) to amplify DNA sequences from a sequenced genome or transcriptome. In silico PCR was proposed as an educational tool for molecular biology...

Schaeffer; Barbara Wold (July 2008). "Mapping and quantifying mammalian transcriptomes by RNA-Seq". Nat Methods. 5 (7): 621–628. doi:10.1038/nmeth.1226. ISSN 1548-7091...

selection techniques. Transcriptomes: The Transcriptomes Group works on the various aspects of sequencing and analysis of transcriptomes, based on next-generation...

comprehensive study of the genomes and transcriptomes of HEK 293 and five derivative cell lines compared the HEK 293 transcriptome with that of human kidney, adrenal...

Xu ZG, et al. (2002). "Insight into hepatocellular carcinogenesis at transcriptome level by comparing gene expression profiles of hepatocellular carcinoma...

have 1,133 pseudogenes which give rise to approximately 50% of its transcriptome. The effect of pseudogenes and genome reduction can be further seen...

that allows for the investigation of phenotypes at the level of the transcriptome, to elucidate gene functions in many cells, in a massively parallel...

for Biological Studies, where he developed CRISPR-Cas13 systems for transcriptome engineering. In 2020, he joined the bioengineering faculty at the University...

LF, de Souza SJ, Simpson AJ (2000). "Shotgun sequencing of the human transcriptome with ORF expressed sequence tags". Proc. Natl. Acad. Sci. U.S.A. 97...

a Tree: A Robust Phylogeny for Terebelliformia (Annelida) Based on Transcriptomes, Molecular and Morphological Data". Biology. 9 (4): 73. doi:10.3390/biology9040073...

Journal of Botany, 87, 9–17. Cannarozzi, G.; et al. (2014). "Genome and transcriptome sequencing identifies breeding targets in the orphan crop tef (Eragrostis...

Christopher; Zane, Lorenzo (2019-11-29). "Draft genome assembly and transcriptome data of the icefish Chionodraco myersi reveal the key role of mitochondria...

Scolytinae), Involved in the Detoxification Process Using Genome and Transcriptome Data". Frontiers in Microbiology. 10 2180. doi:10.3389/fmicb.2019.02180...

method of sampling. Heaps's law has been observed also in single-cell transcriptomes considering genes as the distinct objects in the "vocabulary". Zipf's...

Groen N, Dielen T, Jansen E, et al. (October 2016). "A Single-Cell Transcriptome Atlas of the Human Pancreas". Cell Systems. 3 (4): 385–394.e3. doi:10...

Grant D.; Warren, Anne Y.; Lindsay, Susan (2018-08-10). "Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors". Science...

post-transcriptional regulation. Using deep sequencing S. albidoflavus transcriptome was analysed at the end of exponential growth. 63 small RNAs were identified...

from a freshwater pond for this study. Based on the analysis of the transcriptome, two or three RquA proteins were found in the species, providing evidence...

"Heterochronic evolution reveals modular timing changes in budding yeast transcriptomes". Genome Biology. 11 (10): R105. doi:10.1186/gb-2010-11-10-r105. PMC 3218661...

Schramm, G.; Milinkovitch, M. C. (2011). "Reptilian-transcriptome v1.0, a glimpse in the brain transcriptome of five divergent Sauropsida lineages and the phylogenetic...

R, Guegler K, Rao MS, Mandalam R, Lebkowski J, Stanton LW (2004). "Transcriptome characterization elucidates signaling networks that control human ES...

507:462–470 (2014) Complementing tissue characterisation by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium'...

Missense mRNA mRNA display mRNA surveillance Prokaryotic mRNA degradation Transcriptome, the sum of all RNA in a cell modRNA Nucleoside-modified messenger RNA...

Seidel, Matthias; Eberle, Jonas; Misof, Bernhard; et al. (2023). "A transcriptome-based phylogeny of Scarabaeoidea confirms the sister group relationship...

technology, researchers were able to update the human adenovirus type 2 transcriptome and document the presence of 904 splice variants produced by the virus...

Pontén, Fredrik (2015-01-01). "The human gastrointestinal tract-specific transcriptome and proteome as defined by RNA sequencing and antibody-based profiling"...

Andersen, John F., Ribeiro, José M. C. (2009). "The salivary gland transcriptome of the neotropical malaria vector Anopheles darlingi reveals accelerated...

resistance is increasing throughout the world. One study focused on a transcriptome analysis of A. butzleri infection and explored its virulence genes in...

parent–species combination has an influence on hybrid fertility. Blood transcriptome analysis of a buck–ewe hybrid and its parents revealed significant deviations...

S, Costa FF, et al. (March 2000). "Shotgun sequencing of the human transcriptome with ORF expressed sequence tags". Proceedings of the National Academy...

Institute's web site for a complete list [1]) and then BLASTed against two transcriptome sets. Hairpins that are unique for a Unigene cluster and a RefSeq NM...

Crystal D.; Chang, Limei; Chen, Xue; Farrow, Scott C.; Zhang, Ye (2015). "Transcriptome analysis of 20 taxonomically related benzylisoquinoline alkaloid-producing...

Ponten, F (18 August 2017). "A pathology atlas of the human cancer transcriptome". Science. 357 (6352). doi:10.1126/science.aan2507. PMID 28818916. S2CID 206659235...

African cassava cultivar reveal novel pan-genome and allele-specific transcriptome features". GigaScience. 11 giac028. doi:10.1093/gigascience/giac028...

Pradeep; Kumar, Vikram (27 September 2018). "Large scale changes in the transcriptome of Eisenia fetida during regeneration". PLOS ONE. 13 (9) e0204234. Bibcode:2018PLoSO...

effective for studying palm phylogeny. Recently, nuclear genomes and transcriptomes have been used to reconstruct the phylogeny of palms. This has revealed...

PMC 403697. PMID 12975309. Oh JH, Yang JO, Hahn Y, et al. (2006). "Transcriptome analysis of human gastric cancer". Mamm. Genome. 16 (12): 942–54. doi:10...

within saliva. They accomplish this via presenting a salivary gland transcriptome of the TPB. The researchers discovered TPB sialotranscriptome that played...

Bruning, P.; Cárdenas, L. (2016). "Functional insights into the testis transcriptome of the edible sea urchin Loxechinus albus". Scientific Reports. 6 36516...

C; Zheng, Y; Zhong, Y; Wu, Y; Li, Z; Xu, LA; Xu, M (24 July 2018). "Transcriptome analysis and identification of genes related to terpenoid biosynthesis...

PMID 25454780. Zhang, Yidan; Zhou, Zhi; Wang, Lingui; Huang, Bo (July 2018). "Transcriptome, expression, and activity analyses reveal a vital heat shock protein...

splicing and translational regulation. Recent work has characterized the transcriptome-wide binding sites revealing that thousands of RNAs are bound by TDP-43...

the body and head louse transcriptomes revealed these two organisms are extremely similar genetically. Indeed, transcriptome analyses raises the possible...

2003). "Survey of human genes of retroviral origin: identification and transcriptome of the genes with coding capacity for complete envelope proteins". Journal...

da Silva W, et al. (March 2000). "Shotgun sequencing of the human transcriptome with ORF expressed sequence tags". Proceedings of the National Academy...

United Nations (FAO). Retrieved 6 May 2024. Milan, M. et al. 2011. Transcriptome sequencing and microarray development for the Manila clam, Ruditapes...

Bo; Zhang, Hufang; Wei, Jiufeng (2024). "Ultraconserved elements from transcriptome and genome data provide insight into the phylogenomics of Sternorrhyncha...

S2CID 3269165. Leebens-Mack, James H.; et al. (2019). "One thousand plant transcriptomes and the phylogenomics of green plants". Nature. 574 (7780): 679–685...

Wei H, Zhang S, Lei S, Murage J, Fisk GJ, Li Y, Xu C, Fang R (2005). "Transcriptome characterization elucidates signaling networks that control human ES...

pigmentation genes from Neocaridina denticulate sinensis via comparison of transcriptome in different color strains". Comparative Biochemistry and Physiology...

analysis reveals coordinated reprogramming of the epigenome and the transcriptome in human skeletal muscle after training". Epigenetics. 9 (12): 1557–69...

analysis,[clarification needed] and he was the first to demonstrate how transcriptome data could be integrated in the context of GEMs in order to gain insight...

bacteria, like plants, contained light-sensing proteins. By examining the transcriptome of P. syringae, her team has determined that one-third of its genes...

and functional genomics, generated the need for DNA annotation, a transcriptome technology, identifying genes, their locations and functions. GeneCards...

PM; Comai, L; Coelho, MM (2012). "Global Analysis of the Small RNA Transcriptome in Different Ploidies and Genomic Combinations of a Vertebrate Complex...

parallel signature sequencing (MPSS), RNA-Seq, also known as "Whole Transcriptome Shotgun Sequencing" (WTSS), or various applications of multiplexed in-situ...

although it is often referred to as S. coelicolor for convenience. The transcriptome and translatome analyses of the strain A3(2) were published in 2016...

da Silva W, et al. (March 2000). "Shotgun sequencing of the human transcriptome with ORF expressed sequence tags". Proceedings of the National Academy...

and cumulus cells relationship: new insights from the cumulus cell transcriptome". Molecular Human Reproduction. 16 (10): 715–25. doi:10.1093/molehr/gaq031...

number of people watching the same TV channel, notes in music, cells transcriptomes, and more. In 1957 George A. Miller proposed that a power law emerges...

immunoprecipitation in order to identify RNA binding sites of proteins on a transcriptome-wide scale, thereby increasing our understanding of post-transcriptional...

; Zalsman G.; John J. Mann; Chechik G. (2014). "Transitions in the transcriptome of the serotonergic and dopaminergic systems in the human brain during...

"Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing". Proceedings of the National...

is because the ESCs and diapausing blastocysts having very similar transcriptome profiles. ESCs are derived from the undifferentiated inner mass cells...

Province. In February 2016 a devastating wheat epidemic struck Bangladesh. Transcriptome analysis showed this to be an M. grisea lineage most likely from Minas...

Rieseberg, Loren H.; Rudall, Paula J.; Graham, Sean W. (2016-04-01). "Transcriptome-derived evidence supports recent polyploidization and a major phylogeographic...

"The evolutionary history of holometabolous insects inferred from transcriptome-based phylogeny and comprehensive morphological data". BMC Evolutionary...

T.; Giribet, G.; Siddall, M. (2014). "Pyrosequencing the salivary transcriptome of Haemadipsa interrupta (Annelida: Clitellata: Haemadipsidae): anticoagulant...

neuroscience. This platform of single cell RNA sequencing allows to analyze transcriptomes on a cell-by-cell basis by the use of microfluidic partitioning to capture...

Jawaid W, et al. (May 2020). "Iterative Single-Cell Analyses Define the Transcriptome of the First Functional Hematopoietic Stem Cells". Cell Reports. 31...

Mande; Irigoien, Xabier (2014). "Carotenoid metabolic profiling and transcriptome-genome mining reveal functional equivalence among blue-pigmented copepods...

Wikimedia Commons has media related to Raphanus raphanistrum. Genome and transcriptome resources for Raphanus raphanistrum on NCBI Jepson Manual Treatment...

treatment of rapamycin and dietary restriction has a larger effect on the transcriptome and metabolome of liver". Aging Cell. 13 (2): 311–9. doi:10.1111/acel...

Bidkhori G, et al. (August 2017). "A pathology atlas of the human cancer transcriptome". Science. 357 (6352) eaan2507. Bibcode:2017Sci...357n2507U. doi:10...

active chromatin. As a result, the DNA damage response, epigenome and transcriptome are deregulated in doxorubicin-exposed cells. In the 1950s, an Italian...

Schaeffer L, Wold B (July 2008). "Mapping and quantifying mammalian transcriptomes by RNA-Seq". Nature Methods. 5 (7): 621–8. doi:10.1038/nmeth.1226. PMC 13303166...

PMC 528930. PMID 15489336. Brandenberger R, Wei H, Zhang S, et al. (2005). "Transcriptome characterization elucidates signaling networks that control human ES...

analysis reveals coordinated reprogramming of the epigenome and the transcriptome in human skeletal muscle after training". Epigenetics. 9 (12): 1557–69...

authors then profiled the tumours' transcriptome, the set of genes that are active in tumours; the transcriptomes closely matched those of Schwann cells...

JM, Song KS, Noh SM, Kim S, Yoo HS, Kim YS, Kim NS (December 2005). "Transcriptome analysis of human gastric cancer". Mammalian Genome. 16 (12): 942–54...

Jiménez-Gómez A, Morais D, Tláskal V, Frontela I, et al. (2025-12-05). "Transcriptome-guided discovery of novel plant-associated genes in a rhizosphere Pseudomonas"...

Masaki; Ohara, Osamu; Kubota, Shin (2016-08-01). "De Novo Assembly of the Transcriptome of Turritopsis, a Jellyfish that Repeatedly Rejuvenates". Zoological...

be applied further and be used to understand more about genomes and transcriptomes. [citation needed] DNA sequencing methods currently under development...

from simple molecules in chemistry De novo transcriptome assembly, the method of creating a transcriptome without a reference genome, using de novo sequence...

(2019-02-13). "Resolving the relationships of clams and cockles: dense transcriptome sampling drastically improves the bivalve tree of life". Proceedings...

Zhou M, Weisstaub N, Hen R, Gingrich JA, Sealfon SC (October 2003). "Transcriptome fingerprints distinguish hallucinogenic and nonhallucinogenic 5-hydroxytryptamine...

(April 2004). "A gene atlas of the mouse and human protein-encoding transcriptomes". Proc. Natl. Acad. Sci. U.S.A. 101 (16): 6062–7. Bibcode:2004PNAS....

transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses". Nature Genetics. 44 (9): 1060–5. doi:10.1038/ng.2372. PMC 9754331...

post-transcription, including cycling genes. T. brucei has a circadian oscillating transcriptome that is most likely entrained to the tsetse daily biting pattern for...

Mark K.; Ribeiro, José M.C. (2003). "Exploring the salivary gland transcriptome and proteome of the Anopheles stephensi mosquito". Insect Biochemistry...

Chinnaiyan AM (2015). "The landscape of long noncoding RNAs in the human transcriptome". Nat Genet. 47 (3): 199–208. Bibcode:2015NaGen..47..199I. doi:10.1038/ng...

Wijeratne., S, Wijerante, O, Mittapalli, J, Wang., and Lamp, W. (2012). “Transcriptome analysis of the salivary glands of potato leafhopper, Empoasca fabae”...

Kim JW, Kim VN, Chang H (May 2020). "The Architecture of SARS-CoV-2 Transcriptome". Cell. 181 (4): 914–921.e10. Bibcode:2020Cell..181..914K. doi:10.1016/j...

Sharpe AG, Hughes TR, Page JE (October 2011). "The draft genome and transcriptome of Cannabis sativa". Genome Biology. 12 (10) R102. doi:10.1186/gb-2011-12-10-r102...

Villarín; Pârâu, Liviu G.; Wink, Michael; Bairlein, Franz (2020). "Transcriptome signatures in the brain of a migratory songbird". Comparative Biochemistry...

Joanna K, Markus K, et al. (2012). "BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration". Genome Research...

Morphological, Physiological, and Biochemical Characteristics as Well as the Transcriptome of Matcha Green Tea". International Journal of Molecular Sciences. 23...

biologists RNA Society Macromolecule RNA-based evolution Aptamer RNA origami Transcriptome RNA world hypothesis Copley SD, Smith E, Markowitz HJ (December 2007)...

Defining a reference transcriptome of the adult mammalian retina/retinal pigment epithelium". BMC Genomics (about a transcriptome for eye colour). 5 (1)...

Heidrich N, Reinhardt R, Nieselt K, et al. (May 2013). "High-resolution transcriptome maps reveal strain-specific regulatory features of multiple Campylobacter...

and water availability has also been shown to significantly alter the transcriptome and incite reductions in genes known to be involved in the synthesis...

the Anti-Inflammatory Activity of Fusaproliferin Analogues Guided by Transcriptome Analysis". Frontiers in Pharmacology. 13 881182. doi:10.3389/fphar.2022...

minimizing the errors introduced by the high-throughput methods of transcriptome analysis". Frontiers in Molecular Biosciences. 1: 8. doi:10.3389/fmolb...

Guegler K, Rao MS, Mandalam R, Lebkowski J, Stanton LW (Jun 2004). "Transcriptome characterization elucidates signaling networks that control human ES...

Pontén, Fredrik (2015-01-01). "The human gastrointestinal tract-specific transcriptome and proteome as defined by RNA sequencing and antibody-based profiling"...

facilitated. An exploration of the genomes of five diatoms and one diatom transcriptome led to the identification of 42 genes potentially involved in meiosis...

Meerson, A., Vitellogenesis in Blue Gourami is Accompanied by Brain Transcriptome Changes. Fishes. 4: 54, 2019, pp. 1–11 Degani, G., Hurvitz, A and Levavi-Sivan...

NextBio-Life Science Search Engine Entrez-Cross Database Query Search System TranscriptomeBrowser This article includes a biology-related list of lists....

"Dissecting tRNA-derived fragment complexities using personalized transcriptomes reveals novel fragment classes and unexpected dependencies". Oncotarget...

profiling has the ability to reveal the ribosome pause sites in the whole transcriptome. When the kinetics layer is added, it discloses the time of the pause...

Kristiansen & Frank Nilsen (2008). "Salmon louse (Lepeophtheirus salmonis) transcriptomes during post molting maturation and egg production, revealed using EST-sequencing...

biology (ev-devo). A 2019 study assembled an annotated, multi-tissue transcriptome for the veiled chameleon to use as a resource in evolutionary and developmental...

Verjovski-Almeida S, et al. (2000). "Shotgun sequencing of the human transcriptome with ORF expressed sequence tags". Proc. Natl. Acad. Sci. U.S.A. 97...

Zalsman G, John Mann J, Chechik G (Jul 2014). "Transitions in the transcriptome of the serotonergic and dopaminergic systems in the human brain during...

Verjovski-Almeida S, et al. (2000). "Shotgun sequencing of the human transcriptome with ORF expressed sequence tags". Proc. Natl. Acad. Sci. U.S.A. 97...

; Becerril, Baltazar; Possani, Lourival D.; Ortiz, Ernesto (2015). "Transcriptome Analysis of Scorpion Species Belonging to the Vaejovis Genus". PLOS...

Yang JO, Hahn Y, Kim MR, Byun SS, Jeon YJ, et al. (December 2005). "Transcriptome analysis of human gastric cancer". Mammalian Genome. 16 (12): 942–954...

21076. ISSN 0021-9967. PMID 16927264. "1KITE Database -1,000 Insect Transcriptome Evolution". 1KITE. Archived from the original on 2025-06-18. Retrieved...

WM, Sripa B, Loukas A, Brindley PJ, Gasser RB (2010). "Unlocking the transcriptomes of two carcinogenic parasites, Clonorchis sinensis and Opisthorchis...

in Microdissected Renal Tubules Identifies Nephron Segment-Specific Transcriptomes". Journal of the American Society of Nephrology. 26 (11): 2669–77. doi:10...

D, Akman M, Girke T, Mustroph A, Reinen E, et al. (October 2016). "Transcriptomes of Eight Arabidopsis thaliana Accessions Reveal Core Conserved, Genotype-...

S2CID 4195346. Jansen R, Gerstein M (March 2000). "Analysis of the yeast transcriptome with structural and functional categories: characterizing highly expressed...

Pizzetti F, Casadei R (2016). "Meta-Analysis of Parkinson's Disease Transcriptome Data Using TRAM Software: Whole Substantia Nigra Tissue and Single Dopamine...

Illumina bodyMap2 transcriptome from NCBI Gene entry on CDV3....

1038/nature11112. PMID 22575960. S2CID 3517716. Delatte, Benjamin (2016). "Transcriptome-wide distribution and function of RNA hydroxymethylcytosine". Science...

022. PMID 17981114. One Thousand Plant Transcriptomes Initiative (October 2019). "One thousand plant transcriptomes and the phylogenomics of green plants"...

H; Wong, CE; Zhang, Q; Yu, H (2020). "Mesostigma viride genome and transcriptome provide insights into the origin and evolution of Streptophyta". Advanced...

Johnson, Norman (ed.). "Signatures of Rapid Evolution in Urban and Rural Transcriptomes of White-Footed Mice (Peromyscus leucopus) in the New York Metropolitan...

"Proctacanthus coquilletti (Insecta: Diptera: Asilidae) and 16 representative transcriptomes". PeerJ. 5 e2951. doi:10.7717/peerj.2951. PMC 5289110. PMID 28168115...

Diane; Potriquet, Jeremy; Mulvenna, Jason (2016-04-05). "Tentacle Transcriptome and Venom Proteome of the Pacific Sea Nettle, Chrysaora fuscescens (Cnidaria:...

for data containing multiple smaller FASTA sequences, such as de-novo transcriptome assemblies. Coding region Putative gene Sequerome – A sequence profiling...

R, Guegler K, Rao MS, Mandalam R, Lebkowski J, Stanton LW (2004). "Transcriptome characterization elucidates signaling networks that control human ES...

Souza SJ, Simpson AJ (March 2000). "Shotgun sequencing of the human transcriptome with ORF expressed sequence tags". Proceedings of the National Academy...

genes and regulatory elements of rice cultivation, investigated the transcriptome profile of crops and was successful in discovering a new stress-associated...

progressive mesangial loss and glomerular aneurysms. High throughput whole transcriptome profiling of the FoxD1-Dicer knockout mouse model revealed ectopic upregulation...

Scolopendra subspinipes mutilans L. Koch by peptidomics combined with transcriptome analysis, revealing the diversity of neurotoxins. These neurotoxins...

for sperm transfer. In Hormogaster samnitica and Hormogaster elisae transcriptome DNA libraries were sequenced and two sex pheromones, Attractin and Temptin...

of proteins (the proteome) and the complete set of transcripts (the transcriptome). The first book on metabolomics was published in 2003. The first journal...

Verjovski-Almeida S, et al. (2000). "Shotgun sequencing of the human transcriptome with ORF expressed sequence tags". Proc. Natl. Acad. Sci. U.S.A. 97...

Hacohen, Nir; Gnirke, Andreas; Rhind, Nicholas (2011). "Full-length transcriptome assembly from RNA-Seq data without a reference genome". Nature Biotechnology...

Verjovski-Almeida S, et al. (2000). "Shotgun sequencing of the human transcriptome with ORF expressed sequence tags". Proc. Natl. Acad. Sci. U.S.A. 97...

phylogenomics: A robust phylogeny of deep theraphosid clades inferred from transcriptome data sheds light on the prickly issue of urticating setae evolution"...

(biological) Trans Trans-acting Transcription Transcription factor Transcriptome Transduction Transfection Transfer RNA Transferase Transform Transformation...

often used to 'cluster' cells together into cell-types in single-cell transcriptome analysis. Another use is to model genes or proteins in a pathway and...

Yang, Z.; Wafula, E.K.; Honaas, L.A.; et, al. (2015). "Comparative transcriptome analyses reveal core parasitism genes and suggest gene duplication and...

The single-chromosome and wild-type yeast cells have nearly identical transcriptomes and similar phenotypes. The giant single chromosome can support cell...

E.; Pallavicini, A.; Barruca, M.; Schartl, M. (2016). "The Lungfish Transcriptome: A Glimpse into Molecular Evolution Events at the Transition from Water...

Robert W.; Wu, Dong-Dong; Zhang, Ya-Ping; Che, Jing (2015-12-01). "Transcriptomes reveal the genetic mechanisms underlying ionic regulatory adaptations...

cone and needles of Pinus johndayensis, Oligocene, 33 mya Based on transcriptome analysis, Pinus is most closely related to the genus Cathaya, which...

Pontén, Fredrik (2015-01-01). "The human gastrointestinal tract-specific transcriptome and proteome as defined by RNA sequencing and antibody-based profiling"...

Piccinato C (2008). Regulation of Steroid Metabolism and the Hepatic Transcriptome by Estradiol and Progesterone. pp. 24–25. ISBN 978-1-109-04632-8.[permanent...

6, 2011. Lou, Fangrui; Gao, Tianxiang; Han, Zhiqiang (2019-12-01). "Transcriptome analyses reveal alterations in muscle metabolism, immune responses and...

Pater E, van der Linden R, Marks-Bluth J, et al. (January 2015). "Whole-transcriptome analysis of endothelial to hematopoietic stem cell transition reveals...

Zhang and colleagues analyzed 930 tumour whole genomes with associated transcriptomes (collection of mRNA transcripts) to show mutations in 193 non-coding...

Various genetic sequences can be targeted for epigenetic modification. A transcriptome-wide analysis in mice found that a protein-restricted (PR) diet during...

H. J., Park, Y. E., Baek, S. A., Kim, J. K., & Park, S. U. (2019). Transcriptome analysis and metabolic profiling of Lycoris radiata. Biology, 8(3),...

of an external tail and a minimal, U-shaped interfemoral membrane. A transcriptome dataset is available with more than 25,000 annotated transcripts that...

(November 2013). "Effects of sustained swimming on the red and white muscle transcriptome of rainbow trout (Oncorhynchus mykiss) fed a carbohydrate-rich diet"...

protein-coding genes had missense, nonsense, or splice site mutations. The transcriptomes of over 100 melanomas has also been sequenced and analyzed. Almost 70%...

Sharma, Samin (2017). "Intracoronary Imaging, Cholesterol Efflux, and Transcriptomes After Intensive Statin Treatment". Journal of the American College of...

, Xu, L., Li, Z., Ma, Y., Yao, D. (1 November 2019). "Combining of transcriptome and metabolome analyses for understanding the utilization and metabolic...

; MacDonald, Patrick E. (2020-05-05). "Patch-Seq Links Single-Cell Transcriptomes to Human Islet Dysfunction in Diabetes". Cell Metabolism. 31 (5): 1017–1031...

"The evolutionary history of holometabolous insects inferred from transcriptome-based phylogeny and comprehensive morphological data". BMC Evolutionary...

impaired transcription factor binding to the HLA-DQA2 gene promoter. Transcriptome analysis of blood immune cells and nasopharyngeal cells before elaborate...

epitranscriptome includes all the biochemical modifications of the RNA (the transcriptome) within a cell. In analogy to epigenetics that describes "functionally...

smallpox infection. She also developed a complete map of the poxvirus transcriptome and studied virus-host interactions using both in-vitro and animal model...

"SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis". BMC Bioinformatics. 17: 66. doi:10.1186/s12859-016-0923-y...

LF, de Souza SJ, Simpson AJ (2000). "Shotgun sequencing of the human transcriptome with ORF expressed sequence tags". Proc. Natl. Acad. Sci. U.S.A. 97...

PMID 17621584. Filiatrault MJ, Stodghill PV, Bronstein PA, et al. (May 2010). "Transcriptome analysis of Pseudomonas syringae identifies new genes, noncoding RNAs...

the DLX4 homeobox protein as a regulator of metastasis by combined transcriptome approach". Oncogene. 26 (31): 4600–8. doi:10.1038/sj.onc.1210242. PMID 17260014...

produced in one or a population of cells. Transcriptomics: Study of transcriptomes, their structures and functions. The metabolome is the ensemble of small...

18S, eukaryotic mitochondrial large subunit ribosomal gene 16S, and transcriptome analyses further support the phylogenetic division of Siphonophorae...

Ewing family of tumors, differ from Ewing sarcoma in their genetics, transcriptomes, and epigenetic and epidemiological profiles, indicating that they might...

PMID 28347942. Irie, Naoki; Kuratani, Shigeru (2011-03-22). "Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis"...

Guegler K, Rao MS, Mandalam R, Lebkowski J, Stanton LW (June 2004). "Transcriptome characterization elucidates signaling networks that control human ES...

Namjin; Lee, Su Min; Nahm, Seokhyeon; Kwon, Suk-Yoon (4 January 2017). "Transcriptome analysis of the oriental melon (Cucumis melo L. var. makuwa) during...

Joint measurement of multiple molecular layers (e.g. genome+transcriptome, transcriptome+chromatin) within the same single cell. 2020 Spatially resolved...

metagenomic next-generation sequencing with a technique called digital transcriptome subtraction by a team at the University of Pittsburgh Cancer Institute...

Junhao (2022). "A chromosome-level genome assembly and intestinal transcriptome of Trypoxylus dichotomus (Coleoptera: Scarabaeidae) to understand its...

Pradhan, Seema; Sahoo, Dinabandhu; Parida, Ajay (2020-03-23). "De novo transcriptome assembly and analysis of Phragmites karka, an invasive halophyte, to...

and their gene expressions to heat stress. He demonstrated through transcriptome and proteome studies that heat stress affects the biochemical, cellular...

novo Assembly and Annotation of the Antarctic Alga Prasiola crispa Transcriptome". Frontiers in Molecular Biosciences. 4 89. doi:10.3389/fmolb.2017.00089...

de Souza SJ, Simpson AJ (Mar 2000). "Shotgun sequencing of the human transcriptome with ORF expressed sequence tags". Proceedings of the National Academy...

Huanjia; Hill, Elizabeth; Kim, Eunsoo; Kerney, Ryan (2 May 2017). "Transcriptome analysis illuminates the nature of the intracellular interaction in...

PMID 14667819. Brandenberger R, Wei H, Zhang S, et al. (2005). "Transcriptome characterization elucidates signaling networks that control human ES...

endometrium, is taken up by the pre-implantation embryo and might modify its transcriptome". Development. 142 (18): 3210–3221. doi:10.1242/dev.124289. ISSN 0950-1991...

DR, Lemmon AR, Margres MJ, Aronow K (2012-07-16). "The venom-gland transcriptome of the eastern diamondback rattlesnake (Crotalus adamanteus)". BMC Genomics...

can vary in extent from a single target biomarker to entire genomes, transcriptomes, proteomes and metabolomes. The results may be used to score embryos...

Jiang; Calonje, Michael; Stevenson, Dennis; Zhang, Shouzhou (2024). "Transcriptome sequencing data provide a solid base to understand phylogenetic relationships...

Michael B.; Wilson, Anthony B. (1 September 2015). "Seahorse Brood Pouch Transcriptome Reveals Common Genes Associated with Vertebrate Pregnancy". Molecular...

sequenced. Cotton, J. A., et al. (2014). The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a...

hypothesis-generating approaches allows comprehensive analysis of the genome, transcriptome, proteome, and other molecular layers in disease states. For example...

pre-harvest bagging treatment on kiwifruit appearance and quality via transcriptome and metabolome analyses". Food Research International. 173 (Pt 1) 113276...

as a novel target for therapeutic intervention. Also, the platelet transcriptome reveals quantitative differences between acute and stable coronary artery...

Klichinsky M, et al. (August 2012). "An atlas of the Epstein–Barr virus transcriptome and epigenome reveals host-virus regulatory interactions". Cell Host...

2022). "Plants grown in Apollo lunar regolith present stress-associated transcriptomes that inform prospects for lunar exploration". Communications Biology...

of the tissue of interest using the transcriptomes of sequenced cells and said reference atlas. The transcriptomes can be clustered into cell types using...

Clifton W.; Simakov, Oleg; Rokhsar, Daniel S. (2022-05-04). "Genome and transcriptome mechanisms driving cephalopod evolution". Nature Communications. 13...

ISSN 1916-2790. S2CID 14007221. One Thousand Plant Transcriptomes Initiative (2019). "One thousand plant transcriptomes and the phylogenomics of green plants". Nature...

emerging in making comprehensive analyses of up to entire genomes, transcriptomes, proteomes, and metabolomes, which may be used to score embryos by comparing...

Jensen JK, Andreasen PA, et al. (2017-08-23). "Multi-tissue RNA-seq and transcriptome characterisation of the spiny dogfish shark (Squalus acanthias) provides...

Souza SJ, Simpson AJ (March 2000). "Shotgun sequencing of the human transcriptome with ORF expressed sequence tags". Proceedings of the National Academy...

H.; Wang, Y.; He, Z.; Zhang, D.; Chen, F. (June 2019). "Comparative transcriptome analysis highlights the hormone effects on somatic embryogenesis in...

Currently there is no published genome for the American lobster, although a transcriptome was published in 2016. Crustaceans portal Wahle, R.; Butler, M.; Cockcroft...

Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization". The Plant Journal. 93...

"Mediterranean diet protects against a neuroinflammatory cortical transcriptome: Associations with brain volumetrics, peripheral inflammation, social...

isotope probing (SIP), which has been used to retrieve specific targeted transcriptomes of aerobic microbes in lake sediment. The limitation of this strategy...

diversity based on single nucleotide polymorphisms derived from the transcriptome". BMC Plant Biology. 15 (1): 277. Bibcode:2015BMCPB..15..277S. doi:10...

(2016). "Phylogenomic analyses of bat subordinal relationships based on transcriptome data". Scientific Reports. 6 27726. Bibcode:2016NatSR...627726L. doi:10...

Lin H, Weissman S, Cui W, Gerstein M, Snyder M (March 2010). "Dynamic transcriptomes during neural differentiation of human embryonic stem cells revealed...

in the Buchanan Lake Formation of Canada (46.2–40.4 mya). Based on a transcriptome analysis, Picea is most closely related to the genus Cathaya; those...

Nagai MA, da SW, et al. (Mar 2000). "Shotgun sequencing of the human transcriptome with ORF expressed sequence tags". Proceedings of the National Academy...

R. R.; Chisholm, S. W.; Delong, E. F. (2010). "Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic...

developed CRISPR-Genome Organization (CRISPR-GO) based on dCas9 and CRISPR-Transcriptome Organization (CRISPR-TO) based on dCas13. Qi is a co-inventor of the...

Lapp H et al. A gene atlas of the mouse and human protein-encoding transcriptomes. Proc Natl Acad Sci U S A 2004 Apr 20;101(16):6062-7. PMID 15075390...

Chen Peiwen; Tang Hao; Zeng Fansen; Li Xinzheng (2022). "Integrated transcriptome and hormone analyses provide insights into silver thiosulfate-induced...

(April 2004). "A gene atlas of the mouse and human protein-encoding transcriptomes". Proceedings of the National Academy of Sciences of the United States...

e., genome-wide) insights and its focus on the metabolome, fluxome, transcriptome, and/or proteome. Top-down methods prioritize overall system states...

Baldauf, Sandra L. (2024). "The Acrasis kona genome and developmental transcriptomes reveal deep origins of eukaryotic multicellular pathways". Nature Communications...

C; Bienert, F; Goudet, J; Fumagalli, L (2011). "The draft genome and transcriptome of Cannabis sativa". PLOS ONE. 12 (1) e0170522. Bibcode:2017PLoSO..1270522D...

Martin; Barahona, Mauricio; Ingber, Donald E.; Huang, Sui (2008). "Transcriptome-wide noise controls lineage choice in mammalian progenitor cells". Nature...

Wu B, Zhou L, Liu Z (2015-04-09). "Characterization of the mantle transcriptome of yesso scallop (Patinopecten yessoensis): identification of genes...

Truchado-García, Marta; Grande, Cristina (2016). "Deep, multi-stage transcriptome of the schistosomiasis vector Biomphalaria glabrata provides platform...

genitalia). Two small sample studies in 2012 and 2013 found changes in the transcriptome and methylome of hypospadias patients. A 2022 study found additional...

recent years, researchers have used nuclear genes (obtained through transcriptome sequencing technology) to further investigate the phylogenetic relationships...

Verjovski-Almeida S, et al. (2000). "Shotgun sequencing of the human transcriptome with ORF expressed sequence tags". Proc. Natl. Acad. Sci. U.S.A. 97...

correlations between the metabolome and the other cellular ensembles (genome, transcriptome, proteome, and lipidome), which can be used to predict metabolite abundances...

Paul; Baird, Lisa; Lu, Guoqing; Amundsen, Keenan (December 2013). "Transcriptome analysis of two buffalograss cultivars". BMC Genomics. 14 (1): 613....

25 000 genes, can indicate possible errors in drug metabolism; the transcriptome, made up of 85,000 transcripts, can provide information about which...

Nisbett, James; Guigo, Roderic; Dermitzakis, Emmanouil T. (2010-04-01). "Transcriptome genetics using second generation sequencing in a Caucasian population"...

an increase in lifespan associated with major changes in the liver transcriptome". PLOS ONE. 9 (1) e83988. Bibcode:2014PLoSO...983988F. doi:10.1371/journal...

Arabidopsis thaliana is a first class model organism and the single most important species for fundamental research in plant molecular genetics. A. thaliana...

infection of the cat. Multiple studies revealed distinct differences in the transcriptomes of the asexual and sexual stages of T. gondii. Additionally, metabolic...

(2022). "Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques". Genome Biology. 23 (1) 236. doi:10.1186/s13059-022-02805-9...

Scientific Interface; Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs –...

visualization of heterologous data sets from various sources e.g. genome, transcriptome or proteome data Validation of taxonomic assignment steps in herbivore...

Danchin EG, Rancurel C, Cock PJ, Urwin PE, Jones JT (August 2014). "The transcriptome of Nacobbus aberrans reveals insights into the evolution of sedentary...

Pontén, Fredrik (2015-01-01). "The human gastrointestinal tract-specific transcriptome and proteome as defined by RNA sequencing and antibody-based profiling"...

Karalyn; Loyacano, Jacob; Rokyta, Darin R (2013). "The venom-gland transcriptome of the eastern coral snake (Micrurus fulvius) reveals high venom complexity...

weather warms up. Recently, researchers at USDA-ARS published the whole transcriptome of WCM, and showed that WSMV infection alters gene expression of its...

latent estrogen receptor binding sites to alter the breast cancer cell transcriptome". Molecular Cell. 58 (1): 21–34. doi:10.1016/j.molcel.2015.02.001. ISSN 1097-4164...

phylogenomic analysis of syndermatan relationships" to date was based on transcriptome data from all four groups, and provided "strong support" for the hypothesis...

Hoffmann KF (ed.). "A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni". PLOS Neglected Tropical...

Bioinformatics List of omics topics in biology Plant Proteome Database Transcriptome Interactome Human Proteome Project BioPlex Human Protein Atlas Johnson...

C. (February 9, 2016). "Dictyocaulus viviparus genome, variome and transcriptome elucidate lungworm biology and support future intervention". Scientific...

be wild waterfowl. A 2023 study involving total RNA sequencing and transcriptome mining found that Influenzaviruses and the broader Articulavirales order...

Cowing-Zitron C, et al. (July 2016). "Comprehensive alpha, beta and delta cell transcriptomes reveal that ghrelin selectively activates delta cells and promotes somatostatin...

Wang H, Chang X, Lin J, Chang Y, Chen JC, Reid MS, Jiang CZ (2018). "Transcriptome profiling reveals regulatory mechanisms underlying corolla senescence...

birth throughout evolution, or the relationship between the age of a transcriptome throughout embryonic development. Bioinformatic tools like GenEra have...

Pietrokovski S (February 2017). "The landscape of sex-differential transcriptome and its consequent selection in human adults". BMC Biology. 15 (1) 7...

"Breaking the 1000-gene barrier for Mimivirus using ultra-deep genome and transcriptome sequencing". Virology Journal. 8 (1) 99. doi:10.1186/1743-422X-8-99...

Hannu; Teeri, Teemu H.; Rischer, Heiko (20 October 2022). "De novo transcriptome assembly of Conium maculatum L. to identify candidate genes for coniine...

neural network–based ordinary differential equation that can model transcriptome dynamics by describing continuous-time gene expression changes within...

Sherman, A; Kamenetsky, R (2015). "Garlic (Allium sativum L.) fertility: transcriptome and proteome analyses provide insight into flower and pollen development"...

into a collection of host cells, which constitute some portion of the transcriptome of the organism and are stored as a "library." cDNA is produced from...

PMC 139241. PMID 12477932. Brandenberger R, Wei H, Zhang S, et al. (2004). "Transcriptome characterization elucidates signaling networks that control human ES...

underway. Transcriptomes of three species, P. arenysensis, P. delicatissima, and P. multistriata, have been sequenced. The transcriptomes encode between...

R. Reinhardt, K. Nieselt, and C. M. Sharma. 2013. High-resolution transcriptome maps reveal strain-specific regulatory features of multiple Campylobacter...

Christopher; Zane, Lorenzo (December 2019). "Draft genome assembly and transcriptome data of the icefish Chionodraco myersi reveal the key role of mitochondria...

and Who's Who in Gerontology. His research group helped sequence the transcriptome of the long-lived bowhead whale. He also helps advise the Lifeboat Foundation...

Mandel, Tali; Hübner, Sariel (2023). "Evolutionary conservation and transcriptome analyses attribute perenniality and flowering to day-length responsive...

Barbara Jane (ed.). "Endophytic Life Strategies Decoded by Genome and Transcriptome Analyses of the Mutualistic Root Symbiont Piriformospora indica". PLOS...

Masi A, Vidyarthi AS (April 2022). "Next generation sequencing and transcriptome analysis for identification of ARF and Aux/IAA in pointed gourd (Trichosanthes...

be between 40,000 and 170,000 years before present. However, recent transcriptome analyses cast doubt on whether lice provide a means to date the origin...

(2019) concluded that although there is no parallel evolution of entire transcriptomes of electric organs, there are a significant number of genes that exhibit...

Guegler K, Rao MS, Mandalam R, Lebkowski J, Stanton LW (Jun 2004). "Transcriptome characterization elucidates signaling networks that control human ES...

Laboratory at Seoul National University had constructed an Asian honey bee transcriptome database using an advanced sequencing technique. Srinivasan, M.R. (2004)...

single origin of rowing as a locomotive mechanism. According on the transcriptome-based phylogeny, Gerridae is a monophyletic group. Wing polymorphism...

Guo F, Yan L, Guo H, Li L, Hu B, Zhao Y, et al. (June 2015). "The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells". Cell....

January 2026). "Phylogenomic tree of Cercozoa based on single-cell transcriptomes from 100 uncultured cells". BMC Biology. 24 (1) 55. doi:10.1186/s12915-026-02536-4...

immunodetection. It is also important to examine the cell function, epigenome, transcriptome, and proteome profiles. Cells can also be evaluated based upon their...

Martín-Cuadrado AB, Rosselli R, Pašić L, Rodriguez-Valera F (July 2017). "Transcriptome analysis of Haloquadratum walsbyi: vanity is but the surface". BMC Genomics...

Grimm S, Siam M, Williams A, Rezaeian AH, Kraushaar D, et al. (2023). "Transcriptome, Proteome, and Protein Synthesis within the Intracellular Cytomatrix"...

monocyte-derived cells do, however, retain the signature of monocytes in their transcriptome and they cluster with monocytes and not with bona fide dendritic cells...

1038/ng1285. PMID 14702039. Brandenberger R, Wei H, Zhang S, et al. (2005). "Transcriptome characterization elucidates signaling networks that control human ES...

Georg; Strickler, Susan R. (March 2025). "Genome and Tissue-Specific Transcriptome of the Tropical Milkweed (Asclepias curassavica)". Plant Direct. 9 (3)...

Richard C.; Liston, Aaron (September 20, 2019). "A draft genome and transcriptome of common milkweed ( Asclepias syriaca ) as resources for evolutionary...

structure, or evolution. It can be performed on the entire genome, transcriptome or proteome of an organism, and can also involve only selected segments...

Matthew; Gilleard, John S; Cotton, James A (2013). "The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery"...

are immune related genes, which were found in the first whole-body transcriptome of B. splendens obtained by high-throughput sequencing. In 2019, the...

without 0.1% DMSO and analyzed the transcriptome, proteome and DNA methylation profiles. In both tissue types, transcriptome analysis detected >2000 differentially...

Misaka, T; Nakajima, KI; Abe, K; Asakura, T (13 May 2021). "De novo transcriptome analysis and comparative expression profiling of genes associated with...

Transcriptomics Database, which by 2011 provided a sequence reference for the transcriptome of some thirty species. Major classes of plant phytochemicals are described...

Hibbett D, Schmoll M, Kubicek CP, et al. (2009). Dixon RA (ed.). "Genome, Transcriptome, and Secretome Analysis of Wood Decay Fungus Postia placenta Supports...

R Hughes; Jonathan E Page (24 October 2011). "The draft genome and transcriptome of Cannabis sativa". Genome Biology. 12 (10): R102. doi:10.1186/gb-2011-12-10-r102...

Frisbie, J.; Crum, R. J.; Goldstein, D. L.; Krane, C. M. (2020). "Hepatic transcriptome of the freeze-tolerant Cope's gray treefrog, Dryophytes chrysoscelis:...

Traumeel appeared to have a broad ‘phytocellular’ effect on the wound transcriptome by altering the balance of cell types present in the wound. "MediNatura...

Bo; Zhang, Hufang; Wei, Jiufeng (2024). "Ultraconserved elements from transcriptome and genome data provide insight into the phylogenomics of Sternorrhyncha...

PMC 528930. PMID 15489336. Oh JH, Yang JO, Hahn Y, et al. (2006). "Transcriptome analysis of human gastric cancer". Mamm. Genome. 16 (12): 942–54. doi:10...

methods being more generally applied. Biology portal Association mapping Transcriptome-wide association study Epidemiology Genetic diversity Gene–environment...

LJ, Galbraith DA, Grozinger CM, Felton GW (2017). "Host plant driven transcriptome plasticity in the salivary glands of the cabbage looper (Trichoplusia...

methods to confirm the presence and activity of functional enzymes when transcriptome analysis is performed. A more sensitive approach to transcript analysis...

R. (March 2015). "The landscape of long noncoding RNAs in the human transcriptome". Nature Genetics. 47 (3): 199–208. doi:10.1038/ng.3192. ISSN 1546-1718...

above-ground plant resistance to bacterial leaf spot and alters plant transcriptome". Environmental Microbiology. 26 (7) e16676. doi:10.1111/1462-2920.16676...

group to Hexapoda both in phylogenomic and combined morphological and transcriptome studies. In other studies Remipedia and Cephalocarida are grouped together...

strands. This cDNA can be sequenced, and the results are compared with a transcriptome, or reference genome, in order to determine and characterize the abundance...

Munk R, Kim KM, Piao Y, De S, Abdelmohsen K, Gorospe M (August 2019). "Transcriptome signature of cellular senescence". Nucleic Acids Research. 47 (14):...

For example, the genome contains the ORFeome, which gives rise to the transcriptome, which is translated to the proteome. Other terms are overlapping and...

Barrangou R (1 August 2018). "Conserved Genome Organization and Core Transcriptome of the Lactobacillus acidophilus Complex". Frontiers in Microbiology...

primers (probes) to amplify DNA sequences from a sequenced genome or transcriptome. These tools are used to optimize the design of primers for target DNA...

Moreira, Raquel C.; Yunes, José A.; Campos, Francisco AP (2010-08-06). "Transcriptome analysis of the oil-rich seed of the bioenergy crop Jatropha curcas...

Tan, C. H.; Tan, K. Y.; Fung, S. Y.; Tan, N. H. (2015). "Venom-gland transcriptome and venom proteome of the Malaysian king cobra (Ophiophagus hannah)"...

1038/ng1285. PMID 14702039. Brandenberger R, Wei H, Zhang S, et al. (2005). "Transcriptome characterization elucidates signaling networks that control human ES...

operational taxonomic unit (OTU) or amplicon sequence variant (ASV), transcriptome, proteome, and more. The approach used depends upon the research hypothesis...

(2022-12-15). "Structure-guided isoform identification for the human transcriptome". eLife. 11 e82556. doi:10.7554/eLife.82556. PMC 9812405. PMID 36519529...

(2018). The Exon Junction Complex: A Multitasking Guardian of the Transcriptome. Molecular cell, 72(5), 799–801. Leung, C. S., Douglass, S. M., Morselli...

(December 2018). "Base editing: precision chemistry on the genome and transcriptome of living cells". Nature Reviews Genetics. 19 (12): 770–788. doi:10...

2017). "Effect of efflux pump inhibition on Pseudomonas aeruginosa transcriptome and virulence". Scientific Reports. 7 (1) 11392. Bibcode:2017NatSR....

Himmelbauer, Heinz; Nika, Lisa; Grabherr, Reingard (March 2018). "Comparative transcriptome analysis of a Trichoplusia ni cell line reveals distinct host responses...

1038/ng1285. PMID 14702039. Brandenberger R, Wei H, Zhang S, et al. (2005). "Transcriptome characterization elucidates signaling networks that control human ES...

PMC 528928. PMID 15489334. Oh JH, Yang JO, Hahn Y, et al. (2006). "Transcriptome analysis of human gastric cancer". Mamm. Genome. 16 (12): 942–954. doi:10...

PMID 16314882. S2CID 10102745. Oh JH, Yang JO, Hahn Y, et al. (2006). "Transcriptome analysis of human gastric cancer". Mamm. Genome. 16 (12): 942–54. doi:10...

involvement in chromosome stability, its interaction with the cellular transcriptome, its interaction with other cytoskeletal or synaptic proteins, its involvement...

Cantacessi C., Hall R. S., Campbell B. E. et al. (2011). "A Portrait of the Transcriptome of the Neglected Trematode, Fasciola gigantica—Biological and Biotechnological...

Reyes, Alejandro; Brennecke, Philip (September 2015). "Single-cell transcriptome analysis reveals coordinated ectopic gene-expression patterns in medullary...

changes in uterine gene expression: a comparative analysis of the uterine transcriptome in viviparous and oviparous lizards". Genome Biol Evol. 8 (10): 3226–3239...

ISSAAC-seq (In Situ Sequencing of chromatin Accessibility And Cellular transcriptomes) represents a multimodal update to ATAC-seq, providing a powerful method...

evolution of deep-sea scale worms (Annelida: Polynoidae): insights from transcriptome comparison with a shallow-water species". Scientific Reports. 7 (1)...

musae leads to an early reprogramming of the Musa paradisiaca defense transcriptome". 3 Biotech. 12 (177): 177. doi:10.1007/s13205-022-03245-9. PMC 9288577...

Yong, Zhang; Shu-Fei, Zhang; Lin, Lin (6 August 2012). "Comparative Transcriptome Analysis of a Toxin-Producing Dinoflagellate Alexandrium catenella and...

J, Bono H, Kondo S, et al. (December 2002). "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs" (PDF). Nature...

da Silva W, et al. (March 2000). "Shotgun sequencing of the human transcriptome with ORF expressed sequence tags". Proceedings of the National Academy...

the Phylogeny of Leucague and identification of Orthologus Genes from transcriptomes". {{cite web}}: Missing or empty |url= (help) "Orchard orbweaver,...

Ivester, Clifford J.; Braun, Thomas; Tsonis, Panagiotis A. (2013-04-16). "Transcriptome Analysis of Newt Lens Regeneration Reveals Distinct Gradients in Gene...

J Moran, et al. Nature Neuroscience 14(4): 459–468 (2011). "Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP...

Brandenberger R, Wei H, Zhang S, Lei S, Murage J, Fisk GJ, et al. (June 2004). "Transcriptome characterization elucidates signaling networks that control human ES...

are in mice, which may contribute to their longevity. The DNA repair transcriptomes of the liver of humans, naked mole-rats, and mice were compared. The...

PMID 16189514. S2CID 4427026. Oh JH, Yang JO, Hahn Y, et al. (2006). "Transcriptome analysis of human gastric cancer". Mamm. Genome. 16 (12): 942–54. doi:10...

Schellhorn H (January 2011). "Antagonistic regulation of motility and transcriptome expression by RpoN and RpoS in Escherichia coli". Molecular Microbiology...

Changes in Uterine Gene Expression: A Comparative Analysis of the Uterine Transcriptome in Viviparous and Oviparous Lizards". Genome Biology and Evolution....

has 12 (six pairs) of chromosomes, i.e. 2n = 12. The draft genome and transcriptomes were published in 2014. Its genome is 634.5 MB in size. The species...

The transcriptome of embryonic stem cells...

diverse populations, including people with genetic disorders or cancers Transcriptome analysis is the study of all the RNA transcripts that are produced by...

structures. High-throughput sequencing may also be used to obtain the transcriptome of an organism, allowing inference of phylogenetic relationships using...

January 2026). "Phylogenomic tree of Cercozoa based on single-cell transcriptomes from 100 uncultured cells". BMC Biology. 24 (1) 55. doi:10.1186/s12915-026-02536-4...

Zhao, W (November 2024). "Comprehensive analysis of the mRNA and miRNA transcriptome implicated in the immune response of Procambarus clarkii to Spiroplasma...

Ji-Feng; Wu, Shu-Hsing; Swidzinski, Jodi (2005-05-01). "Comparative transcriptome analysis reveals significant differences in gene expression and signalling...

selected panel of genes in heart cells and, more recently, in the whole transcriptomes of immune cells, and human pancreas cells. The adult brain is composed...

"An xQTL map integrates the genetic architecture of the human brain's transcriptome and epigenome". Nature Neuroscience. 20 (10): 1418–1426. doi:10.1038/nn...

Scholze AR, O'Keeffe S, et al. (September 2014). "An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral...

Jellen, E. N.; Maughan, P. J. (2016). "The Amaranth Genome: Genome, Transcriptome, and Physical Map Assembly". The Plant Genome. 9 (1) plantgenome2015...

et al. (Dec 2001). "Insight into hepatocellular carcinogenesis at transcriptome level by comparing gene expression profiles of hepatocellular carcinoma...

small but significant amounts of erroneous data. New high-throughput transcriptome sequencing technologies such as RNA-Seq and ChIP-sequencing open opportunities...

Mason, Olivia (ed.). "Heterotroph Interactions Alter Prochlorococcus Transcriptome Dynamics during Extended Periods of Darkness". mSystems. 3 (3) e00040-18...

carcinomas identifies human papillomavirus clade–specific epigenome and transcriptome landscapes". Nature Genetics. 52 (8): 800–810. doi:10.1038/s41588-020-0673-7...

which focus on more specific purposes. "GeneNote and GeneAnnot for transcriptome analyses, GeneLoc for genomic locations and markers, GeneALaCart for...

Zhi-Cheng; Zhang, Chuan-Xi (April 2012). "De novo intestine-specific transcriptome of the brown planthopper Nilaparvata lugens revealed potential functions...

"Nonsense-mediated mRNA decay: an intricate machinery that shapes transcriptomes". Nature Reviews Molecular Cell Biology. 16 (11): 665–677. doi:10.1038/nrm4063...

Douglas E.; Soltis, Pamela S. (October 2019). "One thousand plant transcriptomes and the phylogenomics of green plants". Nature. 574 (7780): 679–685...

identify oncogenes. This research involves studying cancer genomes, transcriptomes and proteomes in model organisms such as mice, identifying potential...

and C-type lectins composed the major components of the venom gland transcriptome. McDiarmid RW, Campbell JA, Touré TA (1999). Snake Species of the World:...

Guegler K, Rao MS, Mandalam R, Lebkowski J, Stanton LW (June 2004). "Transcriptome characterization elucidates signaling networks that control human ES...

Rodrigues produced an informative study detailing both the proteome and the transcriptome of the Neuwied's Lancehead (Bothropoides pauloensis), with all the methods...

De Vos, W. M.; Van Hylckama Vlieg, J. E. T. (2010). "Mixed-Culture Transcriptome Analysis Reveals the Molecular Basis of Mixed-Culture Growth in Streptococcus...